miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 35703 0.87 0.020915
Target:  5'- cGgUGGGCCGGGGGcUCGGUgGCGGCCCc -3'
miRNA:   3'- -CgACCUGGCCCCCuAGCCG-CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 97094 0.83 0.043022
Target:  5'- gGCUGGGCCGGGGGcgCcagccgGGcCGCGGCCg -3'
miRNA:   3'- -CGACCUGGCCCCCuaG------CC-GCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 39774 0.8 0.069567
Target:  5'- -aUGGccucgaggacgucGCCGGGGGG-CGGCGCGGCCg -3'
miRNA:   3'- cgACC-------------UGGCCCCCUaGCCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 1187 0.79 0.081105
Target:  5'- gGCcgGGGCCGGGGccggGcgCGGCGCGGaCCCc -3'
miRNA:   3'- -CGa-CCUGGCCCC----CuaGCCGCGCC-GGG- -5'
23842 3' -64.4 NC_005261.1 + 38268 0.78 0.095164
Target:  5'- cCUGGGCUGGGGGcggcuggugcacgCGGUGCuGGCCCg -3'
miRNA:   3'- cGACCUGGCCCCCua-----------GCCGCG-CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 2978 0.78 0.096594
Target:  5'- gGCUGaGGCUGGGGc-UCGGCcugGCGGCCCg -3'
miRNA:   3'- -CGAC-CUGGCCCCcuAGCCG---CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 55307 0.77 0.120635
Target:  5'- aGCcGGugCGGGGGGUCagggggugcuguGGgGCGGCCg -3'
miRNA:   3'- -CGaCCugGCCCCCUAG------------CCgCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 68688 0.75 0.146566
Target:  5'- cGCguggGGGCCGGcGcGGAcgacggCGGCGcCGGCCCu -3'
miRNA:   3'- -CGa---CCUGGCC-C-CCUa-----GCCGC-GCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 97745 0.75 0.146566
Target:  5'- gGCaGGGgCGGGGcGGgcucggCGGCGCGGCCg -3'
miRNA:   3'- -CGaCCUgGCCCC-CUa-----GCCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 73172 0.75 0.149783
Target:  5'- uGCUcGGCCGGGGGGagGGUGCacacgacgagguuGGCCCc -3'
miRNA:   3'- -CGAcCUGGCCCCCUagCCGCG-------------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 4563 0.75 0.153801
Target:  5'- gGCUGGAUccgCGGGcGGGUcCGGCGgGGCgCCc -3'
miRNA:   3'- -CGACCUG---GCCC-CCUA-GCCGCgCCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 130559 0.75 0.157162
Target:  5'- uGCUGGgcggcccGCCGGGcGGAagCGccgccGCGCGGCCCc -3'
miRNA:   3'- -CGACC-------UGGCCC-CCUa-GC-----CGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 36918 0.75 0.165262
Target:  5'- cGCUGGGCCGGGacguacuccGGGgcccugcgcUGGCGCaaGGCCCg -3'
miRNA:   3'- -CGACCUGGCCC---------CCUa--------GCCGCG--CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 9629 0.74 0.16925
Target:  5'- gGCgGGGgUGGGGGcuggGUgGGCGgGGCCCa -3'
miRNA:   3'- -CGaCCUgGCCCCC----UAgCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 58280 0.74 0.183458
Target:  5'- cGCUcacgGGGCCGGcgcgccggggggcgcGGGGagGGgGCGGCCCa -3'
miRNA:   3'- -CGA----CCUGGCC---------------CCCUagCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 28719 0.74 0.185635
Target:  5'- --gGGGcCCGGGGGccUCGGCGCccuccgaGGCCCc -3'
miRNA:   3'- cgaCCU-GGCCCCCu-AGCCGCG-------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 74048 0.74 0.190503
Target:  5'- aGCgc-GCCGGGGGGcugCGGCagcugcgcgacGCGGCCCg -3'
miRNA:   3'- -CGaccUGGCCCCCUa--GCCG-----------CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 31003 0.74 0.195026
Target:  5'- gGCcgGGGCCaGGGGccCGGCGCcGGCCa -3'
miRNA:   3'- -CGa-CCUGGcCCCCuaGCCGCG-CCGGg -5'
23842 3' -64.4 NC_005261.1 + 56146 0.74 0.195026
Target:  5'- cGC-GGGCCGaGGGuGGcggcagCGGCGgGGCCCg -3'
miRNA:   3'- -CGaCCUGGC-CCC-CUa-----GCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 62828 0.73 0.204353
Target:  5'- cGCgGGGCaccggCGGGGGAcUGGCGCGcCCCg -3'
miRNA:   3'- -CGaCCUG-----GCCCCCUaGCCGCGCcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.