miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 22977 0.73 0.214064
Target:  5'- --aGGACCGGGaGGAggCGGCggaggaagaggGgGGCCCg -3'
miRNA:   3'- cgaCCUGGCCC-CCUa-GCCG-----------CgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 98352 0.73 0.219067
Target:  5'- cGCgGGGgCGGGGG-UgGGCGCgGGCUCu -3'
miRNA:   3'- -CGaCCUgGCCCCCuAgCCGCG-CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 123189 0.73 0.223654
Target:  5'- gGCUGGugUGGGcGGAcccagccgccgcgUaaGCGCGGCCUg -3'
miRNA:   3'- -CGACCugGCCC-CCU-------------AgcCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 52261 0.72 0.229372
Target:  5'- cGCUGuccgcGCCGGGGGG-CGGUggucacgacgGCGGUCCa -3'
miRNA:   3'- -CGACc----UGGCCCCCUaGCCG----------CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 24172 0.72 0.234676
Target:  5'- cGCaGGcuuCCGGGGGGucgUCGGCGaGGCuCCa -3'
miRNA:   3'- -CGaCCu--GGCCCCCU---AGCCGCgCCG-GG- -5'
23842 3' -64.4 NC_005261.1 + 88170 0.72 0.245594
Target:  5'- aGCcGGGCCGGGGcGAcgccggCGGCGcCGGCg- -3'
miRNA:   3'- -CGaCCUGGCCCC-CUa-----GCCGC-GCCGgg -5'
23842 3' -64.4 NC_005261.1 + 15278 0.72 0.245594
Target:  5'- gGCgccGCCGGGGcGcgCGGuCGCGGCCUc -3'
miRNA:   3'- -CGaccUGGCCCC-CuaGCC-GCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 51718 0.72 0.245594
Target:  5'- aGCUG---CGGGGGGUCGuGCGCacgcaGGCCCc -3'
miRNA:   3'- -CGACcugGCCCCCUAGC-CGCG-----CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 74836 0.72 0.25693
Target:  5'- uGCUcgcGGACCuGGGGAggCGGCGC-GCCg -3'
miRNA:   3'- -CGA---CCUGGcCCCCUa-GCCGCGcCGGg -5'
23842 3' -64.4 NC_005261.1 + 97697 0.72 0.262756
Target:  5'- uGCcgGGGCgGuGGGGAgaCGGCggGUGGCCCg -3'
miRNA:   3'- -CGa-CCUGgC-CCCCUa-GCCG--CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 22744 0.72 0.262756
Target:  5'- --cGGGCgCGGGG---CGGCgGCGGCCCa -3'
miRNA:   3'- cgaCCUG-GCCCCcuaGCCG-CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 98709 0.72 0.262756
Target:  5'- aGCUgGGGCCGGGGuc-CGGCcuugggggcacGCGGCCg -3'
miRNA:   3'- -CGA-CCUGGCCCCcuaGCCG-----------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 98676 0.71 0.26869
Target:  5'- gGCgGGcuccGCCGGGGccggaGGCGCGGCCg -3'
miRNA:   3'- -CGaCC----UGGCCCCcuag-CCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 132046 0.71 0.274122
Target:  5'- cCUGGACCccGGGGAgguggCGGCcgaggucGCGGCCg -3'
miRNA:   3'- cGACCUGGc-CCCCUa----GCCG-------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 2792 0.71 0.274731
Target:  5'- gGCUGccgccggcGGCCGGGaGGGgcCGG-GCGGCCCc -3'
miRNA:   3'- -CGAC--------CUGGCCC-CCUa-GCCgCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 129671 0.71 0.274731
Target:  5'- gGCgGGACCGGGGGcgucgcgacUCGGgcCGgGGCCg -3'
miRNA:   3'- -CGaCCUGGCCCCCu--------AGCC--GCgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 30802 0.71 0.274731
Target:  5'- uGCUgGGGCCGGaGGAgcuGGgGgGGCCCg -3'
miRNA:   3'- -CGA-CCUGGCCcCCUag-CCgCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 38595 0.71 0.280881
Target:  5'- uGCUGGcggcccgcgGCUGGcGGGuGUUGGcCGCGGCCg -3'
miRNA:   3'- -CGACC---------UGGCC-CCC-UAGCC-GCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 83912 0.71 0.280881
Target:  5'- gGCUcgGGACCGacGGGGUCcgagcGCGCGGCCg -3'
miRNA:   3'- -CGA--CCUGGCc-CCCUAGc----CGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 80070 0.71 0.280881
Target:  5'- cGCgggGGGCgUGGGGGAcgcggacCGGCGCGcGCgCCg -3'
miRNA:   3'- -CGa--CCUG-GCCCCCUa------GCCGCGC-CG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.