miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 3' -52.3 NC_005261.1 + 1293 0.69 0.921693
Target:  5'- cCGGCGGGgcucccgucgccggcGGCGGCAcgcGcUCCGGGACGc -3'
miRNA:   3'- -GCUGCUC---------------UCGCUGUa--CaAGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 5402 0.67 0.964599
Target:  5'- -aGCGAGAGCG-CggGcgCCGcGAACGa -3'
miRNA:   3'- gcUGCUCUCGCuGuaCaaGGC-CUUGC- -5'
23843 3' -52.3 NC_005261.1 + 7881 0.72 0.825202
Target:  5'- gGGCaGcGAGCGGCucUGUUCCGGcGCGg -3'
miRNA:   3'- gCUG-CuCUCGCUGu-ACAAGGCCuUGC- -5'
23843 3' -52.3 NC_005261.1 + 10589 0.66 0.982955
Target:  5'- gCGACGuGAGCGGCAgcgacUCCaGcAGCGa -3'
miRNA:   3'- -GCUGCuCUCGCUGUaca--AGGcC-UUGC- -5'
23843 3' -52.3 NC_005261.1 + 10862 0.69 0.925031
Target:  5'- aCGGCGAGGaCGACGUGUUcuuccccgagcCCGGcgccAACGg -3'
miRNA:   3'- -GCUGCUCUcGCUGUACAA-----------GGCC----UUGC- -5'
23843 3' -52.3 NC_005261.1 + 11107 0.7 0.901111
Target:  5'- gCGACGGGA-CGAgAUGcgCCGGcAGCGu -3'
miRNA:   3'- -GCUGCUCUcGCUgUACaaGGCC-UUGC- -5'
23843 3' -52.3 NC_005261.1 + 12064 0.68 0.945018
Target:  5'- cCGGCGgugcGGcAGCGGCGUccGcgCCGGGGCGg -3'
miRNA:   3'- -GCUGC----UC-UCGCUGUA--CaaGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 17737 0.68 0.957465
Target:  5'- gCGGCGcucGGAGCgGGCGgacUUCUGGGGCGg -3'
miRNA:   3'- -GCUGC---UCUCG-CUGUac-AAGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 30084 0.66 0.980907
Target:  5'- gCGGCGcacccGGAGCG-CGUGcUCCGGGcaGCu -3'
miRNA:   3'- -GCUGC-----UCUCGCuGUACaAGGCCU--UGc -5'
23843 3' -52.3 NC_005261.1 + 30470 0.7 0.880647
Target:  5'- gGACGGGGGgGACGaGgaggCCGGGGCc -3'
miRNA:   3'- gCUGCUCUCgCUGUaCaa--GGCCUUGc -5'
23843 3' -52.3 NC_005261.1 + 32388 0.67 0.97085
Target:  5'- gCGGCGc-GGCGGCGUc--CCGGAGCGc -3'
miRNA:   3'- -GCUGCucUCGCUGUAcaaGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 32919 0.66 0.97868
Target:  5'- gCGugGGGGGCGGCGggcgGggggGGGGCGg -3'
miRNA:   3'- -GCugCUCUCGCUGUa---CaaggCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 33609 0.67 0.964599
Target:  5'- cCGGCGcGGGCGGCggGgcCCGGGggcGCGc -3'
miRNA:   3'- -GCUGCuCUCGCUGuaCaaGGCCU---UGC- -5'
23843 3' -52.3 NC_005261.1 + 46259 0.69 0.925031
Target:  5'- gCGGCGGccGCGAcCGUGUccCCGGGGCGc -3'
miRNA:   3'- -GCUGCUcuCGCU-GUACAa-GGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 51011 0.67 0.977255
Target:  5'- gCGGCGGGAGCucGGCGagcgccacccggcgcUGUUCCuGGAGgCGc -3'
miRNA:   3'- -GCUGCUCUCG--CUGU---------------ACAAGG-CCUU-GC- -5'
23843 3' -52.3 NC_005261.1 + 55230 0.69 0.929343
Target:  5'- gCGGCGAGGGCGGCAgcaccgcagCCGccGCGa -3'
miRNA:   3'- -GCUGCUCUCGCUGUacaa-----GGCcuUGC- -5'
23843 3' -52.3 NC_005261.1 + 56043 0.67 0.97085
Target:  5'- uGACGcgcgcGAGCGA--UGUUCgGGGGCGc -3'
miRNA:   3'- gCUGCu----CUCGCUguACAAGgCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 59792 0.67 0.976267
Target:  5'- aCGGCGGcGGGCGGCAgg--CCGGcgUGg -3'
miRNA:   3'- -GCUGCU-CUCGCUGUacaaGGCCuuGC- -5'
23843 3' -52.3 NC_005261.1 + 60058 0.7 0.880647
Target:  5'- gCGGCGaAGAGCGGCGg---CCGGuccGCGg -3'
miRNA:   3'- -GCUGC-UCUCGCUGUacaaGGCCu--UGC- -5'
23843 3' -52.3 NC_005261.1 + 60253 0.69 0.91356
Target:  5'- gCGGCGGGAGCGGCGgccGUgaagaggcgcCCGGggUc -3'
miRNA:   3'- -GCUGCUCUCGCUGUa--CAa---------GGCCuuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.