miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 3' -52.3 NC_005261.1 + 75078 0.66 0.984833
Target:  5'- cCGGCGGGGGCucggcgGGCAUcGUcUUCGGGACc -3'
miRNA:   3'- -GCUGCUCUCG------CUGUA-CA-AGGCCUUGc -5'
23843 3' -52.3 NC_005261.1 + 75402 0.68 0.961145
Target:  5'- uCGACGAGGGCG-CGgc--CCGGcGCGu -3'
miRNA:   3'- -GCUGCUCUCGCuGUacaaGGCCuUGC- -5'
23843 3' -52.3 NC_005261.1 + 88145 0.66 0.984833
Target:  5'- cCGcGCGGGGGCGccccggccgcGCAgccGggCCGGGGCGa -3'
miRNA:   3'- -GC-UGCUCUCGC----------UGUa--CaaGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 92632 0.7 0.901111
Target:  5'- -cGCGAGAGCggGACcgGgaCCGGGACc -3'
miRNA:   3'- gcUGCUCUCG--CUGuaCaaGGCCUUGc -5'
23843 3' -52.3 NC_005261.1 + 92695 0.67 0.976267
Target:  5'- gCGAgCGGGAGCGGgAgcgGgagCgGGAGCGg -3'
miRNA:   3'- -GCU-GCUCUCGCUgUa--Caa-GgCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 95173 0.71 0.865858
Target:  5'- gCGGCGAGGGgGACGUGccccagccCUGGGACc -3'
miRNA:   3'- -GCUGCUCUCgCUGUACaa------GGCCUUGc -5'
23843 3' -52.3 NC_005261.1 + 97706 0.66 0.982955
Target:  5'- gGugGGGAGaCGGCggGUggcCCGG-GCGg -3'
miRNA:   3'- gCugCUCUC-GCUGuaCAa--GGCCuUGC- -5'
23843 3' -52.3 NC_005261.1 + 98669 0.73 0.789379
Target:  5'- aGGCGAGGGCGggcuccGCcgGggCCGGAggcGCGg -3'
miRNA:   3'- gCUGCUCUCGC------UGuaCaaGGCCU---UGC- -5'
23843 3' -52.3 NC_005261.1 + 106637 0.69 0.91356
Target:  5'- gCGACGAGcucGGCGACGUcgcgcucgCCGGcGCGg -3'
miRNA:   3'- -GCUGCUC---UCGCUGUAcaa-----GGCCuUGC- -5'
23843 3' -52.3 NC_005261.1 + 110814 0.71 0.842062
Target:  5'- aGGCGGGGGCGGacgGggCCGcGGACGa -3'
miRNA:   3'- gCUGCUCUCGCUguaCaaGGC-CUUGC- -5'
23843 3' -52.3 NC_005261.1 + 114303 0.67 0.97366
Target:  5'- gGACGccuuGAGCGACccGgcagUCCGGcGCa -3'
miRNA:   3'- gCUGCu---CUCGCUGuaCa---AGGCCuUGc -5'
23843 3' -52.3 NC_005261.1 + 114557 0.68 0.957465
Target:  5'- uCGGCgGGGAGCGGCcgccgCCGGAucGCGu -3'
miRNA:   3'- -GCUG-CUCUCGCUGuacaaGGCCU--UGC- -5'
23843 3' -52.3 NC_005261.1 + 117903 0.7 0.887702
Target:  5'- aGACGGguGAGCGGC-UGcgCgGGAACGa -3'
miRNA:   3'- gCUGCU--CUCGCUGuACaaGgCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 125388 0.72 0.798576
Target:  5'- -aACGGGuGCGuGCGguacGUUCCGGAGCGg -3'
miRNA:   3'- gcUGCUCuCGC-UGUa---CAAGGCCUUGC- -5'
23843 3' -52.3 NC_005261.1 + 125981 0.69 0.930397
Target:  5'- gCGACGGGGGCcgcaACAUGgccUCUGGAGuCGu -3'
miRNA:   3'- -GCUGCUCUCGc---UGUACa--AGGCCUU-GC- -5'
23843 3' -52.3 NC_005261.1 + 128880 0.68 0.957465
Target:  5'- aCGACGAG-GCGGgGg---CCGGGugGg -3'
miRNA:   3'- -GCUGCUCuCGCUgUacaaGGCCUugC- -5'
23843 3' -52.3 NC_005261.1 + 136397 0.7 0.901111
Target:  5'- gGACuGGGGGCgGACGUGgugUCGGAGCc -3'
miRNA:   3'- gCUG-CUCUCG-CUGUACaa-GGCCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.