Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23843 | 3' | -52.3 | NC_005261.1 | + | 55230 | 0.69 | 0.929343 |
Target: 5'- gCGGCGAGGGCGGCAgcaccgcagCCGccGCGa -3' miRNA: 3'- -GCUGCUCUCGCUGUacaa-----GGCcuUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 46259 | 0.69 | 0.925031 |
Target: 5'- gCGGCGGccGCGAcCGUGUccCCGGGGCGc -3' miRNA: 3'- -GCUGCUcuCGCU-GUACAa-GGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 10862 | 0.69 | 0.925031 |
Target: 5'- aCGGCGAGGaCGACGUGUUcuuccccgagcCCGGcgccAACGg -3' miRNA: 3'- -GCUGCUCUcGCUGUACAA-----------GGCC----UUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 1293 | 0.69 | 0.921693 |
Target: 5'- cCGGCGGGgcucccgucgccggcGGCGGCAcgcGcUCCGGGACGc -3' miRNA: 3'- -GCUGCUC---------------UCGCUGUa--CaAGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 106637 | 0.69 | 0.91356 |
Target: 5'- gCGACGAGcucGGCGACGUcgcgcucgCCGGcGCGg -3' miRNA: 3'- -GCUGCUC---UCGCUGUAcaa-----GGCCuUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 60253 | 0.69 | 0.91356 |
Target: 5'- gCGGCGGGAGCGGCGgccGUgaagaggcgcCCGGggUc -3' miRNA: 3'- -GCUGCUCUCGCUGUa--CAa---------GGCCuuGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 11107 | 0.7 | 0.901111 |
Target: 5'- gCGACGGGA-CGAgAUGcgCCGGcAGCGu -3' miRNA: 3'- -GCUGCUCUcGCUgUACaaGGCC-UUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 92632 | 0.7 | 0.901111 |
Target: 5'- -cGCGAGAGCggGACcgGgaCCGGGACc -3' miRNA: 3'- gcUGCUCUCG--CUGuaCaaGGCCUUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 136397 | 0.7 | 0.901111 |
Target: 5'- gGACuGGGGGCgGACGUGgugUCGGAGCc -3' miRNA: 3'- gCUG-CUCUCG-CUGUACaa-GGCCUUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 117903 | 0.7 | 0.887702 |
Target: 5'- aGACGGguGAGCGGC-UGcgCgGGAACGa -3' miRNA: 3'- gCUGCU--CUCGCUGuACaaGgCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 60058 | 0.7 | 0.880647 |
Target: 5'- gCGGCGaAGAGCGGCGg---CCGGuccGCGg -3' miRNA: 3'- -GCUGC-UCUCGCUGUacaaGGCCu--UGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 30470 | 0.7 | 0.880647 |
Target: 5'- gGACGGGGGgGACGaGgaggCCGGGGCc -3' miRNA: 3'- gCUGCUCUCgCUGUaCaa--GGCCUUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 95173 | 0.71 | 0.865858 |
Target: 5'- gCGGCGAGGGgGACGUGccccagccCUGGGACc -3' miRNA: 3'- -GCUGCUCUCgCUGUACaa------GGCCUUGc -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 110814 | 0.71 | 0.842062 |
Target: 5'- aGGCGGGGGCGGacgGggCCGcGGACGa -3' miRNA: 3'- gCUGCUCUCGCUguaCaaGGC-CUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 7881 | 0.72 | 0.825202 |
Target: 5'- gGGCaGcGAGCGGCucUGUUCCGGcGCGg -3' miRNA: 3'- gCUG-CuCUCGCUGu-ACAAGGCCuUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 125388 | 0.72 | 0.798576 |
Target: 5'- -aACGGGuGCGuGCGguacGUUCCGGAGCGg -3' miRNA: 3'- gcUGCUCuCGC-UGUa---CAAGGCCUUGC- -5' |
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23843 | 3' | -52.3 | NC_005261.1 | + | 98669 | 0.73 | 0.789379 |
Target: 5'- aGGCGAGGGCGggcuccGCcgGggCCGGAggcGCGg -3' miRNA: 3'- gCUGCUCUCGC------UGuaCaaGGCCU---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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