Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23843 | 5' | -58 | NC_005261.1 | + | 53104 | 0.67 | 0.752872 |
Target: 5'- -aCGCaGCgccgCGGCGCUGcgCGCCGc -3' miRNA: 3'- gaGCGaCGauuaGCCGCGGCa-GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 120600 | 0.67 | 0.743256 |
Target: 5'- gUCGcCUGCggccUCGGCGCCGUggggcuccUGCUg -3' miRNA: 3'- gAGC-GACGauu-AGCCGCGGCA--------GCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 129316 | 0.67 | 0.743256 |
Target: 5'- -gCGcCUGCgc--UGGCGCCGcgUCGCCGa -3' miRNA: 3'- gaGC-GACGauuaGCCGCGGC--AGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 127690 | 0.67 | 0.733544 |
Target: 5'- -cCGCUGCcccggCGGCGCCGgaggaGCUg -3' miRNA: 3'- gaGCGACGauua-GCCGCGGCag---CGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 93097 | 0.67 | 0.733544 |
Target: 5'- gCUCGUccGCaucgCGcGCGUCGUCGCCGg -3' miRNA: 3'- -GAGCGa-CGauuaGC-CGCGGCAGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 134333 | 0.67 | 0.723745 |
Target: 5'- uCUCGCUGCUGuacCGcaagcccccGCGCCGcCGCgCGg -3' miRNA: 3'- -GAGCGACGAUua-GC---------CGCGGCaGCG-GU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 120366 | 0.67 | 0.723745 |
Target: 5'- -aCGgUGCgcgaCGGCGCCG-CGCCc -3' miRNA: 3'- gaGCgACGauuaGCCGCGGCaGCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 130755 | 0.67 | 0.72079 |
Target: 5'- -gCGCUGCUGGUaaccacggagcagcUGGCGCCccgCGCUg -3' miRNA: 3'- gaGCGACGAUUA--------------GCCGCGGca-GCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 118722 | 0.67 | 0.762382 |
Target: 5'- gUCGCggGCgggcaCGGCGUCGcgcUCGCCGa -3' miRNA: 3'- gAGCGa-CGauua-GCCGCGGC---AGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 78837 | 0.67 | 0.768034 |
Target: 5'- --aGCUGCgguacgccggCGGCGcCCGcCGCCGg -3' miRNA: 3'- gagCGACGauua------GCCGC-GGCaGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 66608 | 0.67 | 0.771778 |
Target: 5'- --aGCUGCUGGaUGGCGCgCGUgCGCa- -3' miRNA: 3'- gagCGACGAUUaGCCGCG-GCA-GCGgu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 121067 | 0.67 | 0.762382 |
Target: 5'- -gCGCgGUgugcgCGGCGCCGgcggcCGCCAg -3' miRNA: 3'- gaGCGaCGauua-GCCGCGGCa----GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 120004 | 0.67 | 0.762382 |
Target: 5'- -gCGCcgGCUAcgCGGCcguguGCCG-CGCCGc -3' miRNA: 3'- gaGCGa-CGAUuaGCCG-----CGGCaGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 29957 | 0.67 | 0.762382 |
Target: 5'- -cCGCgaggcGCUAGaggCGGCGCgGUgCGCCGc -3' miRNA: 3'- gaGCGa----CGAUUa--GCCGCGgCA-GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 31421 | 0.67 | 0.752872 |
Target: 5'- -cCGCUGCccggggaGGCGCUGgcggCGCCGc -3' miRNA: 3'- gaGCGACGauuag--CCGCGGCa---GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 97528 | 0.67 | 0.752872 |
Target: 5'- gCUCGCcGC-GAUCGGCGgccCCGgcggUGCCGg -3' miRNA: 3'- -GAGCGaCGaUUAGCCGC---GGCa---GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 76998 | 0.67 | 0.733544 |
Target: 5'- uCUCGCcGCgcg-CGcGCGCCGcccuccUCGCCGa -3' miRNA: 3'- -GAGCGaCGauuaGC-CGCGGC------AGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 132954 | 0.68 | 0.703923 |
Target: 5'- -gCGCUGCgccgAcgUGGcCGCCuucGUCGCCGc -3' miRNA: 3'- gaGCGACGa---UuaGCC-GCGG---CAGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 93229 | 0.68 | 0.67376 |
Target: 5'- -gCGCgGCaaaaaagCGGcCGCCGUCGCCu -3' miRNA: 3'- gaGCGaCGauua---GCC-GCGGCAGCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 49948 | 0.68 | 0.67376 |
Target: 5'- -cCGC-GCaaaaaagGAggCGGCGCCGUCGUCAu -3' miRNA: 3'- gaGCGaCGa------UUa-GCCGCGGCAGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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