Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23843 | 5' | -58 | NC_005261.1 | + | 73148 | 0.66 | 0.816731 |
Target: 5'- gCUCGCgccGCcAggCGGCGuuGUUGCUc -3' miRNA: 3'- -GAGCGa--CGaUuaGCCGCggCAGCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 91742 | 0.66 | 0.802748 |
Target: 5'- uUCGCgGCgcucacgccggCGGCGCaaaGUCGUCAa -3' miRNA: 3'- gAGCGaCGauua-------GCCGCGg--CAGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 29229 | 0.66 | 0.808039 |
Target: 5'- -cCGCgcagGCUAcgccgCGGCGCCG-CGCg- -3' miRNA: 3'- gaGCGa---CGAUua---GCCGCGGCaGCGgu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 31787 | 0.66 | 0.825256 |
Target: 5'- -gUGCUGCccg-CGGCGCaGUgCGCCGc -3' miRNA: 3'- gaGCGACGauuaGCCGCGgCA-GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 60337 | 0.66 | 0.816731 |
Target: 5'- -aCGgUGUUug-CGGCGCCGcggccgcgCGCCAg -3' miRNA: 3'- gaGCgACGAuuaGCCGCGGCa-------GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 39788 | 0.66 | 0.825256 |
Target: 5'- gUCGCcgggggGCggcgCGGcCGCCGgCGCCAg -3' miRNA: 3'- gAGCGa-----CGauuaGCC-GCGGCaGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 131868 | 0.66 | 0.816731 |
Target: 5'- --gGCUGCUugagcUGGCgGCCGcCGCCGc -3' miRNA: 3'- gagCGACGAuua--GCCG-CGGCaGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 18695 | 0.66 | 0.825256 |
Target: 5'- --gGCUGUUG--CGGCGCaCGUCGgCGa -3' miRNA: 3'- gagCGACGAUuaGCCGCG-GCAGCgGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 2735 | 0.66 | 0.816731 |
Target: 5'- aCUUGCgcuUGCgccgCGGCggGCCGUCGCg- -3' miRNA: 3'- -GAGCG---ACGauuaGCCG--CGGCAGCGgu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 118497 | 0.66 | 0.790191 |
Target: 5'- -gCGCUGCggacccUGGCGCCGcUCGgCGa -3' miRNA: 3'- gaGCGACGauua--GCCGCGGC-AGCgGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 106100 | 0.66 | 0.825256 |
Target: 5'- aUCGCgac--GUCGGcCGgCGUCGCCGg -3' miRNA: 3'- gAGCGacgauUAGCC-GCgGCAGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 129316 | 0.67 | 0.743256 |
Target: 5'- -gCGcCUGCgc--UGGCGCCGcgUCGCCGa -3' miRNA: 3'- gaGC-GACGauuaGCCGCGGC--AGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 53104 | 0.67 | 0.752872 |
Target: 5'- -aCGCaGCgccgCGGCGCUGcgCGCCGc -3' miRNA: 3'- gaGCGaCGauuaGCCGCGGCa-GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 121067 | 0.67 | 0.762382 |
Target: 5'- -gCGCgGUgugcgCGGCGCCGgcggcCGCCAg -3' miRNA: 3'- gaGCGaCGauua-GCCGCGGCa----GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 120600 | 0.67 | 0.743256 |
Target: 5'- gUCGcCUGCggccUCGGCGCCGUggggcuccUGCUg -3' miRNA: 3'- gAGC-GACGauu-AGCCGCGGCA--------GCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 31346 | 0.67 | 0.762382 |
Target: 5'- -cCGCUGCgg--CGGCGC-GUgGCCu -3' miRNA: 3'- gaGCGACGauuaGCCGCGgCAgCGGu -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 83002 | 0.67 | 0.771778 |
Target: 5'- cCUCGC-GCac--CGaGcCGCCGUCGCCGg -3' miRNA: 3'- -GAGCGaCGauuaGC-C-GCGGCAGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 29957 | 0.67 | 0.762382 |
Target: 5'- -cCGCgaggcGCUAGaggCGGCGCgGUgCGCCGc -3' miRNA: 3'- gaGCGa----CGAUUa--GCCGCGgCA-GCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 118722 | 0.67 | 0.762382 |
Target: 5'- gUCGCggGCgggcaCGGCGUCGcgcUCGCCGa -3' miRNA: 3'- gAGCGa-CGauua-GCCGCGGC---AGCGGU- -5' |
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23843 | 5' | -58 | NC_005261.1 | + | 120004 | 0.67 | 0.762382 |
Target: 5'- -gCGCcgGCUAcgCGGCcguguGCCG-CGCCGc -3' miRNA: 3'- gaGCGa-CGAUuaGCCG-----CGGCaGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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