miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 106100 0.66 0.825256
Target:  5'- aUCGCgac--GUCGGcCGgCGUCGCCGg -3'
miRNA:   3'- gAGCGacgauUAGCC-GCgGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 96810 0.66 0.790191
Target:  5'- gCUCGCUccaguccgaagaGCUGucggCGGUGUCGagGCCGg -3'
miRNA:   3'- -GAGCGA------------CGAUua--GCCGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 88769 0.66 0.780129
Target:  5'- -gCGCUGCgcuccUCGGCccuggccGCCGgCGCCGc -3'
miRNA:   3'- gaGCGACGauu--AGCCG-------CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 43168 0.66 0.790191
Target:  5'- aUCGCgGCgcGAUaCGGCGCCGcCGgCGa -3'
miRNA:   3'- gAGCGaCGa-UUA-GCCGCGGCaGCgGU- -5'
23843 5' -58 NC_005261.1 + 116730 0.66 0.790191
Target:  5'- gUCGCcgcccUGCUGAgccccuUUGGCGCC-UCGCUg -3'
miRNA:   3'- gAGCG-----ACGAUU------AGCCGCGGcAGCGGu -5'
23843 5' -58 NC_005261.1 + 101561 0.66 0.790191
Target:  5'- cCUCGCcgaggaUGCgcucggCGcGCGCCGUgGCCu -3'
miRNA:   3'- -GAGCG------ACGauua--GC-CGCGGCAgCGGu -5'
23843 5' -58 NC_005261.1 + 118762 0.66 0.79919
Target:  5'- gUUGC-GCUAcgCGcGCGCCGaCGCUg -3'
miRNA:   3'- gAGCGaCGAUuaGC-CGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 53771 0.66 0.790191
Target:  5'- -gCGCgGCaaacgaccgGGUCGuCGCCGUCGCCu -3'
miRNA:   3'- gaGCGaCGa--------UUAGCcGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 127785 0.66 0.790191
Target:  5'- --gGCUGCUcgagCGGCggGCCGgCGCCGc -3'
miRNA:   3'- gagCGACGAuua-GCCG--CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 118497 0.66 0.790191
Target:  5'- -gCGCUGCggacccUGGCGCCGcUCGgCGa -3'
miRNA:   3'- gaGCGACGauua--GCCGCGGC-AGCgGU- -5'
23843 5' -58 NC_005261.1 + 66548 0.66 0.808039
Target:  5'- --aGCaGCUGGUCGGCcguGCCG-CGCUc -3'
miRNA:   3'- gagCGaCGAUUAGCCG---CGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 51216 0.66 0.790191
Target:  5'- -gCGCUGCUGcUgGGCGCgcuaGcCGCCu -3'
miRNA:   3'- gaGCGACGAUuAgCCGCGg---CaGCGGu -5'
23843 5' -58 NC_005261.1 + 91742 0.66 0.802748
Target:  5'- uUCGCgGCgcucacgccggCGGCGCaaaGUCGUCAa -3'
miRNA:   3'- gAGCGaCGauua-------GCCGCGg--CAGCGGU- -5'
23843 5' -58 NC_005261.1 + 103449 0.66 0.790191
Target:  5'- cCUCGCggucgGCcg--CcGCGcCCGUCGCCAg -3'
miRNA:   3'- -GAGCGa----CGauuaGcCGC-GGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 107806 0.66 0.78105
Target:  5'- cCUCGCgcgcgGCggcccuagCGGcCGCCGcCGCCu -3'
miRNA:   3'- -GAGCGa----CGauua----GCC-GCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 91864 0.66 0.79919
Target:  5'- -cCGCcgGCaccUCGGCGuCCGUCGCg- -3'
miRNA:   3'- gaGCGa-CGauuAGCCGC-GGCAGCGgu -5'
23843 5' -58 NC_005261.1 + 55399 0.66 0.816731
Target:  5'- -cCGCUGagacugcauCUAcgCGcGCGCCGgcuggCGCCAc -3'
miRNA:   3'- gaGCGAC---------GAUuaGC-CGCGGCa----GCGGU- -5'
23843 5' -58 NC_005261.1 + 2735 0.66 0.816731
Target:  5'- aCUUGCgcuUGCgccgCGGCggGCCGUCGCg- -3'
miRNA:   3'- -GAGCG---ACGauuaGCCG--CGGCAGCGgu -5'
23843 5' -58 NC_005261.1 + 104451 0.66 0.78105
Target:  5'- gUCGCcGCcgccggCGGCGCCGuccaccUCGCCc -3'
miRNA:   3'- gAGCGaCGauua--GCCGCGGC------AGCGGu -5'
23843 5' -58 NC_005261.1 + 117220 0.66 0.79919
Target:  5'- -cCGCUGCc--UgGGCGCCGagucCGCCu -3'
miRNA:   3'- gaGCGACGauuAgCCGCGGCa---GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.