miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 2735 0.66 0.816731
Target:  5'- aCUUGCgcuUGCgccgCGGCggGCCGUCGCg- -3'
miRNA:   3'- -GAGCG---ACGauuaGCCG--CGGCAGCGgu -5'
23843 5' -58 NC_005261.1 + 3841 0.71 0.503217
Target:  5'- -gCGCUgGCggcagCGGCGCCGgCGCCGc -3'
miRNA:   3'- gaGCGA-CGauua-GCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 10517 0.68 0.713868
Target:  5'- -cCGCUGCgggccccgCGGCGCgcucgcUGUCGCCc -3'
miRNA:   3'- gaGCGACGauua----GCCGCG------GCAGCGGu -5'
23843 5' -58 NC_005261.1 + 14743 0.7 0.58233
Target:  5'- gUgGCagggGC-GAUCGGCGCCG-CGCCGc -3'
miRNA:   3'- gAgCGa---CGaUUAGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 15374 0.68 0.693917
Target:  5'- -gCGCUcgGCgcccUCGGCGCCGcCGUCGa -3'
miRNA:   3'- gaGCGA--CGauu-AGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 18695 0.66 0.825256
Target:  5'- --gGCUGUUG--CGGCGCaCGUCGgCGa -3'
miRNA:   3'- gagCGACGAUuaGCCGCG-GCAGCgGU- -5'
23843 5' -58 NC_005261.1 + 20567 0.69 0.63311
Target:  5'- --gGCUGCgcagCGGCGCCGgcggCGCgGg -3'
miRNA:   3'- gagCGACGauuaGCCGCGGCa---GCGgU- -5'
23843 5' -58 NC_005261.1 + 22802 0.7 0.562217
Target:  5'- gUCGCggccgGCgg--CGGCGCUGcCGCCGc -3'
miRNA:   3'- gAGCGa----CGauuaGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 23115 0.68 0.693917
Target:  5'- cCUCGCUGCUGgaGUCGcUGCCGcucaCGUCGc -3'
miRNA:   3'- -GAGCGACGAU--UAGCcGCGGCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 23940 0.7 0.602584
Target:  5'- cCUCGCgGCggguUCGGgGUCGUCGgCAc -3'
miRNA:   3'- -GAGCGaCGauu-AGCCgCGGCAGCgGU- -5'
23843 5' -58 NC_005261.1 + 28181 0.69 0.60868
Target:  5'- uCUCGCUGCgcgccgaagcCGGCgGCC-UCGCCGc -3'
miRNA:   3'- -GAGCGACGauua------GCCG-CGGcAGCGGU- -5'
23843 5' -58 NC_005261.1 + 28259 0.72 0.465412
Target:  5'- --gGCUGCUcgGGggGGCGCUGUUGCCGc -3'
miRNA:   3'- gagCGACGA--UUagCCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 28839 0.68 0.683859
Target:  5'- -cCGCgGCUGAggCGGcCGUCGUgGCCGc -3'
miRNA:   3'- gaGCGaCGAUUa-GCC-GCGGCAgCGGU- -5'
23843 5' -58 NC_005261.1 + 28876 0.69 0.653469
Target:  5'- --gGCUGCggcgCGGaCGCCGcCGCCu -3'
miRNA:   3'- gagCGACGauuaGCC-GCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 29229 0.66 0.808039
Target:  5'- -cCGCgcagGCUAcgccgCGGCGCCG-CGCg- -3'
miRNA:   3'- gaGCGa---CGAUua---GCCGCGGCaGCGgu -5'
23843 5' -58 NC_005261.1 + 29856 0.76 0.281995
Target:  5'- gCUCGCcgGCcGcgCGGCGCCGgCGCCGc -3'
miRNA:   3'- -GAGCGa-CGaUuaGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 29957 0.67 0.762382
Target:  5'- -cCGCgaggcGCUAGaggCGGCGCgGUgCGCCGc -3'
miRNA:   3'- gaGCGa----CGAUUa--GCCGCGgCA-GCGGU- -5'
23843 5' -58 NC_005261.1 + 31346 0.67 0.762382
Target:  5'- -cCGCUGCgg--CGGCGC-GUgGCCu -3'
miRNA:   3'- gaGCGACGauuaGCCGCGgCAgCGGu -5'
23843 5' -58 NC_005261.1 + 31421 0.67 0.752872
Target:  5'- -cCGCUGCccggggaGGCGCUGgcggCGCCGc -3'
miRNA:   3'- gaGCGACGauuag--CCGCGGCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 31787 0.66 0.825256
Target:  5'- -gUGCUGCccg-CGGCGCaGUgCGCCGc -3'
miRNA:   3'- gaGCGACGauuaGCCGCGgCA-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.