miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 32254 0.69 0.647365
Target:  5'- -gCGCUGCUGGagccgcacgccgaGGCGCCGcCGCUg -3'
miRNA:   3'- gaGCGACGAUUag-----------CCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 33742 0.66 0.816731
Target:  5'- cCUCGCg------CGGCGCCGggGCCGg -3'
miRNA:   3'- -GAGCGacgauuaGCCGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 37186 0.72 0.484138
Target:  5'- -gCGCUGCUGG-CGGCGCUGcuggcggCGCUAc -3'
miRNA:   3'- gaGCGACGAUUaGCCGCGGCa------GCGGU- -5'
23843 5' -58 NC_005261.1 + 37924 0.67 0.771778
Target:  5'- -cCGCUGCgcgAGUaCGaGCGCCGgaGCCGc -3'
miRNA:   3'- gaGCGACGa--UUA-GC-CGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 37996 0.69 0.621907
Target:  5'- -aCGC-GCUAcgCGGCGCCcgaggacgucaagGUCGUCAu -3'
miRNA:   3'- gaGCGaCGAUuaGCCGCGG-------------CAGCGGU- -5'
23843 5' -58 NC_005261.1 + 38414 0.67 0.771778
Target:  5'- cCUCGCcGCUGucgCgGGCGCCcuUCGUCAc -3'
miRNA:   3'- -GAGCGaCGAUua-G-CCGCGGc-AGCGGU- -5'
23843 5' -58 NC_005261.1 + 39788 0.66 0.825256
Target:  5'- gUCGCcgggggGCggcgCGGcCGCCGgCGCCAg -3'
miRNA:   3'- gAGCGa-----CGauuaGCC-GCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 39902 0.69 0.63311
Target:  5'- -gUGCaGCUGGcgCGcGCgGCCGUCGCCAc -3'
miRNA:   3'- gaGCGaCGAUUa-GC-CG-CGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 43168 0.66 0.790191
Target:  5'- aUCGCgGCgcGAUaCGGCGCCGcCGgCGa -3'
miRNA:   3'- gAGCGaCGa-UUA-GCCGCGGCaGCgGU- -5'
23843 5' -58 NC_005261.1 + 43439 0.71 0.522616
Target:  5'- --gGgaGCUGGcUCGGCGCCuggacGUCGCCGg -3'
miRNA:   3'- gagCgaCGAUU-AGCCGCGG-----CAGCGGU- -5'
23843 5' -58 NC_005261.1 + 46380 0.71 0.542297
Target:  5'- gCUCGCUcucgGCgc--CGGCcCCGUCGCCGa -3'
miRNA:   3'- -GAGCGA----CGauuaGCCGcGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 46952 0.75 0.338614
Target:  5'- -cCGCggGCcAGUCcGCGCCGUCGCCGc -3'
miRNA:   3'- gaGCGa-CGaUUAGcCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 49948 0.68 0.67376
Target:  5'- -cCGC-GCaaaaaagGAggCGGCGCCGUCGUCAu -3'
miRNA:   3'- gaGCGaCGa------UUa-GCCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 50784 0.69 0.653469
Target:  5'- -cCGCggcgGCggccgcccCGGCGCCGcCGCCAu -3'
miRNA:   3'- gaGCGa---CGauua----GCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 50859 0.72 0.456191
Target:  5'- gCUCGCcca-GGUCGGCGCCuUCGCCGc -3'
miRNA:   3'- -GAGCGacgaUUAGCCGCGGcAGCGGU- -5'
23843 5' -58 NC_005261.1 + 50890 0.82 0.117205
Target:  5'- -gCGCUGCUAugcuggucaccuugAUCGGCGCCGccUCGCCGg -3'
miRNA:   3'- gaGCGACGAU--------------UAGCCGCGGC--AGCGGU- -5'
23843 5' -58 NC_005261.1 + 51216 0.66 0.790191
Target:  5'- -gCGCUGCUGcUgGGCGCgcuaGcCGCCu -3'
miRNA:   3'- gaGCGACGAUuAgCCGCGg---CaGCGGu -5'
23843 5' -58 NC_005261.1 + 51308 0.72 0.43805
Target:  5'- cCUCGC-GCacgcCGGCGCCGcCGCCGc -3'
miRNA:   3'- -GAGCGaCGauuaGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 51476 0.7 0.55223
Target:  5'- gCUgGC-GCUGAUcacCGGCGCCG-CGCCc -3'
miRNA:   3'- -GAgCGaCGAUUA---GCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 51974 0.83 0.103674
Target:  5'- -gCGCUGCUGGaccgCGGCGCCGcCGCCGa -3'
miRNA:   3'- gaGCGACGAUUa---GCCGCGGCaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.