miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 106100 0.66 0.825256
Target:  5'- aUCGCgac--GUCGGcCGgCGUCGCCGg -3'
miRNA:   3'- gAGCGacgauUAGCC-GCgGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 76654 0.73 0.42033
Target:  5'- -gCGcCUGCgagGUCGGCGCCGugcuggcccUCGCCGa -3'
miRNA:   3'- gaGC-GACGau-UAGCCGCGGC---------AGCGGU- -5'
23843 5' -58 NC_005261.1 + 59409 0.72 0.43805
Target:  5'- gCUCGCcgGCgc--CGGCGCUGUCGCgCGg -3'
miRNA:   3'- -GAGCGa-CGauuaGCCGCGGCAGCG-GU- -5'
23843 5' -58 NC_005261.1 + 51308 0.72 0.43805
Target:  5'- cCUCGC-GCacgcCGGCGCCGcCGCCGc -3'
miRNA:   3'- -GAGCGaCGauuaGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 109795 0.72 0.447069
Target:  5'- -cCGCUGCUGcgacggcCGGCGCCGcuucCGCCGc -3'
miRNA:   3'- gaGCGACGAUua-----GCCGCGGCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 125192 0.72 0.447069
Target:  5'- aUCGCUaucaUAgucGUCGGCGCUGUCGCUg -3'
miRNA:   3'- gAGCGAcg--AU---UAGCCGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 91193 0.72 0.450706
Target:  5'- uUCGCgcGCU--UCGGCGCCGUgcuggccgaggcccaCGCCAa -3'
miRNA:   3'- gAGCGa-CGAuuAGCCGCGGCA---------------GCGGU- -5'
23843 5' -58 NC_005261.1 + 50859 0.72 0.456191
Target:  5'- gCUCGCcca-GGUCGGCGCCuUCGCCGc -3'
miRNA:   3'- -GAGCGacgaUUAGCCGCGGcAGCGGU- -5'
23843 5' -58 NC_005261.1 + 28259 0.72 0.465412
Target:  5'- --gGCUGCUcgGGggGGCGCUGUUGCCGc -3'
miRNA:   3'- gagCGACGA--UUagCCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 68890 0.73 0.39458
Target:  5'- -gCGCUGCg---CGGaCGCCGUCGUCc -3'
miRNA:   3'- gaGCGACGauuaGCC-GCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 131419 0.73 0.386226
Target:  5'- -cCGCUGCcggcagCGGCGCCGgCGCCc -3'
miRNA:   3'- gaGCGACGauua--GCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 124849 0.74 0.354
Target:  5'- cCUCGCgcagGUcug-CGGCGUCGUCGCCu -3'
miRNA:   3'- -GAGCGa---CGauuaGCCGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 50890 0.82 0.117205
Target:  5'- -gCGCUGCUAugcuggucaccuugAUCGGCGCCGccUCGCCGg -3'
miRNA:   3'- gaGCGACGAU--------------UAGCCGCGGC--AGCGGU- -5'
23843 5' -58 NC_005261.1 + 94620 0.77 0.23884
Target:  5'- cCUCGCcGCcgc-CGGCGCCGUCGUCGg -3'
miRNA:   3'- -GAGCGaCGauuaGCCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 77540 0.77 0.256621
Target:  5'- -aUGCcggGCUGGUaCGGCGCCGcCGCCAg -3'
miRNA:   3'- gaGCGa--CGAUUA-GCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 29856 0.76 0.281995
Target:  5'- gCUCGCcgGCcGcgCGGCGCCGgCGCCGc -3'
miRNA:   3'- -GAGCGa-CGaUuaGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 133155 0.75 0.302303
Target:  5'- gCUCGCcGCc-GUCGGCGUCGcCGCCGa -3'
miRNA:   3'- -GAGCGaCGauUAGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 111612 0.75 0.302303
Target:  5'- -gCGCgGCUGGgcugCGGCGCCGUgcCGCCGc -3'
miRNA:   3'- gaGCGaCGAUUa---GCCGCGGCA--GCGGU- -5'
23843 5' -58 NC_005261.1 + 46952 0.75 0.338614
Target:  5'- -cCGCggGCcAGUCcGCGCCGUCGCCGc -3'
miRNA:   3'- gaGCGa-CGaUUAGcCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 95796 0.74 0.346245
Target:  5'- -gCGCUGCUAGcCGGCGCCGgcgggggcUCGCg- -3'
miRNA:   3'- gaGCGACGAUUaGCCGCGGC--------AGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.