miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 136476 0.69 0.650418
Target:  5'- aCUCGC-GCgcgGGcagcagcgagcagcUCGGCGCCGaCGCCu -3'
miRNA:   3'- -GAGCGaCGa--UU--------------AGCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 134333 0.67 0.723745
Target:  5'- uCUCGCUGCUGuacCGcaagcccccGCGCCGcCGCgCGg -3'
miRNA:   3'- -GAGCGACGAUua-GC---------CGCGGCaGCG-GU- -5'
23843 5' -58 NC_005261.1 + 133828 0.68 0.681843
Target:  5'- -gCGCUGCgcggccgcgUGcGCGCCGUgGCCGg -3'
miRNA:   3'- gaGCGACGauua-----GC-CGCGGCAgCGGU- -5'
23843 5' -58 NC_005261.1 + 133689 0.68 0.667684
Target:  5'- gCUCGCUccGCUGGgagcugcgcgacccCGGCGCCGUCuaCGu -3'
miRNA:   3'- -GAGCGA--CGAUUa-------------GCCGCGGCAGcgGU- -5'
23843 5' -58 NC_005261.1 + 133155 0.75 0.302303
Target:  5'- gCUCGCcGCc-GUCGGCGUCGcCGCCGa -3'
miRNA:   3'- -GAGCGaCGauUAGCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 132954 0.68 0.703923
Target:  5'- -gCGCUGCgccgAcgUGGcCGCCuucGUCGCCGc -3'
miRNA:   3'- gaGCGACGa---UuaGCC-GCGG---CAGCGGU- -5'
23843 5' -58 NC_005261.1 + 132373 0.68 0.682851
Target:  5'- gCUCGCcGCgcucgCGGCGCUGUuccccgaggccgcCGCCGa -3'
miRNA:   3'- -GAGCGaCGauua-GCCGCGGCA-------------GCGGU- -5'
23843 5' -58 NC_005261.1 + 132062 0.68 0.683859
Target:  5'- gUgGCgGCcGAggucgCGGcCGCCGUCGCCGc -3'
miRNA:   3'- gAgCGaCGaUUa----GCC-GCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 131868 0.66 0.816731
Target:  5'- --gGCUGCUugagcUGGCgGCCGcCGCCGc -3'
miRNA:   3'- gagCGACGAuua--GCCG-CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 131419 0.73 0.386226
Target:  5'- -cCGCUGCcggcagCGGCGCCGgCGCCc -3'
miRNA:   3'- gaGCGACGauua--GCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 131180 0.71 0.512879
Target:  5'- -cCGCagcgGCUAcgcccgCGGCGCgGUCGCCGc -3'
miRNA:   3'- gaGCGa---CGAUua----GCCGCGgCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 130755 0.67 0.72079
Target:  5'- -gCGCUGCUGGUaaccacggagcagcUGGCGCCccgCGCUg -3'
miRNA:   3'- gaGCGACGAUUA--------------GCCGCGGca-GCGGu -5'
23843 5' -58 NC_005261.1 + 129316 0.67 0.743256
Target:  5'- -gCGcCUGCgc--UGGCGCCGcgUCGCCGa -3'
miRNA:   3'- gaGC-GACGauuaGCCGCGGC--AGCGGU- -5'
23843 5' -58 NC_005261.1 + 127785 0.66 0.790191
Target:  5'- --gGCUGCUcgagCGGCggGCCGgCGCCGc -3'
miRNA:   3'- gagCGACGAuua-GCCG--CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 127690 0.67 0.733544
Target:  5'- -cCGCUGCcccggCGGCGCCGgaggaGCUg -3'
miRNA:   3'- gaGCGACGauua-GCCGCGGCag---CGGu -5'
23843 5' -58 NC_005261.1 + 126402 0.68 0.689899
Target:  5'- -gUGCagGCgccaagagacuUCGcGCGCCGUCGCCAc -3'
miRNA:   3'- gaGCGa-CGauu--------AGC-CGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 125192 0.72 0.447069
Target:  5'- aUCGCUaucaUAgucGUCGGCGCUGUCGCUg -3'
miRNA:   3'- gAGCGAcg--AU---UAGCCGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 124849 0.74 0.354
Target:  5'- cCUCGCgcagGUcug-CGGCGUCGUCGCCu -3'
miRNA:   3'- -GAGCGa---CGauuaGCCGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 121067 0.67 0.762382
Target:  5'- -gCGCgGUgugcgCGGCGCCGgcggcCGCCAg -3'
miRNA:   3'- gaGCGaCGauua-GCCGCGGCa----GCGGU- -5'
23843 5' -58 NC_005261.1 + 120600 0.67 0.743256
Target:  5'- gUCGcCUGCggccUCGGCGCCGUggggcuccUGCUg -3'
miRNA:   3'- gAGC-GACGauu-AGCCGCGGCA--------GCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.