miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 117953 0.69 0.622925
Target:  5'- gCUCGCUGCUAcg-GGCGCgcUCGCUg -3'
miRNA:   3'- -GAGCGACGAUuagCCGCGgcAGCGGu -5'
23843 5' -58 NC_005261.1 + 55180 0.69 0.622925
Target:  5'- gCUCGCgggGCgGAUCGGCGCaCGgcguagCGCgGa -3'
miRNA:   3'- -GAGCGa--CGaUUAGCCGCG-GCa-----GCGgU- -5'
23843 5' -58 NC_005261.1 + 70645 0.69 0.622925
Target:  5'- -cCGCggcGCUGAgguUCGGCGCCG-CgGCCGc -3'
miRNA:   3'- gaGCGa--CGAUU---AGCCGCGGCaG-CGGU- -5'
23843 5' -58 NC_005261.1 + 68505 0.69 0.630054
Target:  5'- uUCGC-GCUGAUgcaggcgugccugcCGGCGCCGccggCGCCc -3'
miRNA:   3'- gAGCGaCGAUUA--------------GCCGCGGCa---GCGGu -5'
23843 5' -58 NC_005261.1 + 93588 0.69 0.63311
Target:  5'- aUCGC-GCgc-UCGGCgaccucGCCGUCGCCc -3'
miRNA:   3'- gAGCGaCGauuAGCCG------CGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 39902 0.69 0.63311
Target:  5'- -gUGCaGCUGGcgCGcGCgGCCGUCGCCAc -3'
miRNA:   3'- gaGCGaCGAUUa-GC-CG-CGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 20567 0.69 0.63311
Target:  5'- --gGCUGCgcagCGGCGCCGgcggCGCgGg -3'
miRNA:   3'- gagCGACGauuaGCCGCGGCa---GCGgU- -5'
23843 5' -58 NC_005261.1 + 53020 0.69 0.63311
Target:  5'- gCUCGCcagcGCUuccgCGGCGCCGgggcaGCCGu -3'
miRNA:   3'- -GAGCGa---CGAuua-GCCGCGGCag---CGGU- -5'
23843 5' -58 NC_005261.1 + 93673 0.69 0.643294
Target:  5'- -cCGCggGCgg--CGGCGCCGgcggggCGCCGg -3'
miRNA:   3'- gaGCGa-CGauuaGCCGCGGCa-----GCGGU- -5'
23843 5' -58 NC_005261.1 + 32254 0.69 0.647365
Target:  5'- -gCGCUGCUGGagccgcacgccgaGGCGCCGcCGCUg -3'
miRNA:   3'- gaGCGACGAUUag-----------CCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 136476 0.69 0.650418
Target:  5'- aCUCGC-GCgcgGGcagcagcgagcagcUCGGCGCCGaCGCCu -3'
miRNA:   3'- -GAGCGaCGa--UU--------------AGCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 99226 0.69 0.653469
Target:  5'- -cCGCggcagGCgcGUCGGCGUCG-CGCCc -3'
miRNA:   3'- gaGCGa----CGauUAGCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 59556 0.69 0.653469
Target:  5'- --gGCUuCUAAUCGGCGCgCGcgcgCGCCGc -3'
miRNA:   3'- gagCGAcGAUUAGCCGCG-GCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 58272 0.69 0.653469
Target:  5'- gCUCGCcGCgcucaCGGgGCCGgcgCGCCGg -3'
miRNA:   3'- -GAGCGaCGauua-GCCgCGGCa--GCGGU- -5'
23843 5' -58 NC_005261.1 + 50784 0.69 0.653469
Target:  5'- -cCGCggcgGCggccgcccCGGCGCCGcCGCCAu -3'
miRNA:   3'- gaGCGa---CGauua----GCCGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 28876 0.69 0.653469
Target:  5'- --gGCUGCggcgCGGaCGCCGcCGCCu -3'
miRNA:   3'- gagCGACGauuaGCC-GCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 106654 0.68 0.663627
Target:  5'- gUCGC-GCUcgcCGGCGCgGUCGuCCAg -3'
miRNA:   3'- gAGCGaCGAuuaGCCGCGgCAGC-GGU- -5'
23843 5' -58 NC_005261.1 + 133689 0.68 0.667684
Target:  5'- gCUCGCUccGCUGGgagcugcgcgacccCGGCGCCGUCuaCGu -3'
miRNA:   3'- -GAGCGA--CGAUUa-------------GCCGCGGCAGcgGU- -5'
23843 5' -58 NC_005261.1 + 49948 0.68 0.67376
Target:  5'- -cCGC-GCaaaaaagGAggCGGCGCCGUCGUCAu -3'
miRNA:   3'- gaGCGaCGa------UUa-GCCGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 81306 0.68 0.67376
Target:  5'- -aCGUccgUGCcguuGUCGGgGUCGUCGCCGu -3'
miRNA:   3'- gaGCG---ACGau--UAGCCgCGGCAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.