miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 118722 0.67 0.762382
Target:  5'- gUCGCggGCgggcaCGGCGUCGcgcUCGCCGa -3'
miRNA:   3'- gAGCGa-CGauua-GCCGCGGC---AGCGGU- -5'
23843 5' -58 NC_005261.1 + 121067 0.67 0.762382
Target:  5'- -gCGCgGUgugcgCGGCGCCGgcggcCGCCAg -3'
miRNA:   3'- gaGCGaCGauua-GCCGCGGCa----GCGGU- -5'
23843 5' -58 NC_005261.1 + 120004 0.67 0.762382
Target:  5'- -gCGCcgGCUAcgCGGCcguguGCCG-CGCCGc -3'
miRNA:   3'- gaGCGa-CGAUuaGCCG-----CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 31346 0.67 0.762382
Target:  5'- -cCGCUGCgg--CGGCGC-GUgGCCu -3'
miRNA:   3'- gaGCGACGauuaGCCGCGgCAgCGGu -5'
23843 5' -58 NC_005261.1 + 97528 0.67 0.752872
Target:  5'- gCUCGCcGC-GAUCGGCGgccCCGgcggUGCCGg -3'
miRNA:   3'- -GAGCGaCGaUUAGCCGC---GGCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 31421 0.67 0.752872
Target:  5'- -cCGCUGCccggggaGGCGCUGgcggCGCCGc -3'
miRNA:   3'- gaGCGACGauuag--CCGCGGCa---GCGGU- -5'
23843 5' -58 NC_005261.1 + 53104 0.67 0.752872
Target:  5'- -aCGCaGCgccgCGGCGCUGcgCGCCGc -3'
miRNA:   3'- gaGCGaCGauuaGCCGCGGCa-GCGGU- -5'
23843 5' -58 NC_005261.1 + 120600 0.67 0.743256
Target:  5'- gUCGcCUGCggccUCGGCGCCGUggggcuccUGCUg -3'
miRNA:   3'- gAGC-GACGauu-AGCCGCGGCA--------GCGGu -5'
23843 5' -58 NC_005261.1 + 129316 0.67 0.743256
Target:  5'- -gCGcCUGCgc--UGGCGCCGcgUCGCCGa -3'
miRNA:   3'- gaGC-GACGauuaGCCGCGGC--AGCGGU- -5'
23843 5' -58 NC_005261.1 + 93097 0.67 0.733544
Target:  5'- gCUCGUccGCaucgCGcGCGUCGUCGCCGg -3'
miRNA:   3'- -GAGCGa-CGauuaGC-CGCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 70218 0.67 0.733544
Target:  5'- --gGCaUGCUGgaGUUGGCGCCG-CGCgCAa -3'
miRNA:   3'- gagCG-ACGAU--UAGCCGCGGCaGCG-GU- -5'
23843 5' -58 NC_005261.1 + 76998 0.67 0.733544
Target:  5'- uCUCGCcGCgcg-CGcGCGCCGcccuccUCGCCGa -3'
miRNA:   3'- -GAGCGaCGauuaGC-CGCGGC------AGCGGU- -5'
23843 5' -58 NC_005261.1 + 79374 0.67 0.733544
Target:  5'- gCUCGUgcaGCUGGUugCGGCGCUGgaucUCGCUg -3'
miRNA:   3'- -GAGCGa--CGAUUA--GCCGCGGC----AGCGGu -5'
23843 5' -58 NC_005261.1 + 127690 0.67 0.733544
Target:  5'- -cCGCUGCcccggCGGCGCCGgaggaGCUg -3'
miRNA:   3'- gaGCGACGauua-GCCGCGGCag---CGGu -5'
23843 5' -58 NC_005261.1 + 134333 0.67 0.723745
Target:  5'- uCUCGCUGCUGuacCGcaagcccccGCGCCGcCGCgCGg -3'
miRNA:   3'- -GAGCGACGAUua-GC---------CGCGGCaGCG-GU- -5'
23843 5' -58 NC_005261.1 + 120366 0.67 0.723745
Target:  5'- -aCGgUGCgcgaCGGCGCCG-CGCCc -3'
miRNA:   3'- gaGCgACGauuaGCCGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 130755 0.67 0.72079
Target:  5'- -gCGCUGCUGGUaaccacggagcagcUGGCGCCccgCGCUg -3'
miRNA:   3'- gaGCGACGAUUA--------------GCCGCGGca-GCGGu -5'
23843 5' -58 NC_005261.1 + 118088 0.68 0.713868
Target:  5'- gCUCGuCUGCUGG-CGGC-CCGcCGCgCAg -3'
miRNA:   3'- -GAGC-GACGAUUaGCCGcGGCaGCG-GU- -5'
23843 5' -58 NC_005261.1 + 10517 0.68 0.713868
Target:  5'- -cCGCUGCgggccccgCGGCGCgcucgcUGUCGCCc -3'
miRNA:   3'- gaGCGACGauua----GCCGCG------GCAGCGGu -5'
23843 5' -58 NC_005261.1 + 75999 0.68 0.703923
Target:  5'- cCUCGC-GCUGGacgcccUGGCGCCGcgcagCGCCGc -3'
miRNA:   3'- -GAGCGaCGAUUa-----GCCGCGGCa----GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.