miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 53771 0.66 0.790191
Target:  5'- -gCGCgGCaaacgaccgGGUCGuCGCCGUCGCCu -3'
miRNA:   3'- gaGCGaCGa--------UUAGCcGCGGCAGCGGu -5'
23843 5' -58 NC_005261.1 + 96810 0.66 0.790191
Target:  5'- gCUCGCUccaguccgaagaGCUGucggCGGUGUCGagGCCGg -3'
miRNA:   3'- -GAGCGA------------CGAUua--GCCGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 118497 0.66 0.790191
Target:  5'- -gCGCUGCggacccUGGCGCCGcUCGgCGa -3'
miRNA:   3'- gaGCGACGauua--GCCGCGGC-AGCgGU- -5'
23843 5' -58 NC_005261.1 + 127785 0.66 0.790191
Target:  5'- --gGCUGCUcgagCGGCggGCCGgCGCCGc -3'
miRNA:   3'- gagCGACGAuua-GCCG--CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 43168 0.66 0.790191
Target:  5'- aUCGCgGCgcGAUaCGGCGCCGcCGgCGa -3'
miRNA:   3'- gAGCGaCGa-UUA-GCCGCGGCaGCgGU- -5'
23843 5' -58 NC_005261.1 + 116730 0.66 0.790191
Target:  5'- gUCGCcgcccUGCUGAgccccuUUGGCGCC-UCGCUg -3'
miRNA:   3'- gAGCG-----ACGAUU------AGCCGCGGcAGCGGu -5'
23843 5' -58 NC_005261.1 + 51216 0.66 0.790191
Target:  5'- -gCGCUGCUGcUgGGCGCgcuaGcCGCCu -3'
miRNA:   3'- gaGCGACGAUuAgCCGCGg---CaGCGGu -5'
23843 5' -58 NC_005261.1 + 101561 0.66 0.790191
Target:  5'- cCUCGCcgaggaUGCgcucggCGcGCGCCGUgGCCu -3'
miRNA:   3'- -GAGCG------ACGauua--GC-CGCGGCAgCGGu -5'
23843 5' -58 NC_005261.1 + 107806 0.66 0.78105
Target:  5'- cCUCGCgcgcgGCggcccuagCGGcCGCCGcCGCCu -3'
miRNA:   3'- -GAGCGa----CGauua----GCC-GCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 104451 0.66 0.78105
Target:  5'- gUCGCcGCcgccggCGGCGCCGuccaccUCGCCc -3'
miRNA:   3'- gAGCGaCGauua--GCCGCGGC------AGCGGu -5'
23843 5' -58 NC_005261.1 + 88769 0.66 0.780129
Target:  5'- -gCGCUGCgcuccUCGGCccuggccGCCGgCGCCGc -3'
miRNA:   3'- gaGCGACGauu--AGCCG-------CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 38414 0.67 0.771778
Target:  5'- cCUCGCcGCUGucgCgGGCGCCcuUCGUCAc -3'
miRNA:   3'- -GAGCGaCGAUua-G-CCGCGGc-AGCGGU- -5'
23843 5' -58 NC_005261.1 + 66608 0.67 0.771778
Target:  5'- --aGCUGCUGGaUGGCGCgCGUgCGCa- -3'
miRNA:   3'- gagCGACGAUUaGCCGCG-GCA-GCGgu -5'
23843 5' -58 NC_005261.1 + 74281 0.67 0.771778
Target:  5'- -cCGCgGCggg-CGGgGCgGUCGCCGc -3'
miRNA:   3'- gaGCGaCGauuaGCCgCGgCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 83002 0.67 0.771778
Target:  5'- cCUCGC-GCac--CGaGcCGCCGUCGCCGg -3'
miRNA:   3'- -GAGCGaCGauuaGC-C-GCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 37924 0.67 0.771778
Target:  5'- -cCGCUGCgcgAGUaCGaGCGCCGgaGCCGc -3'
miRNA:   3'- gaGCGACGa--UUA-GC-CGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 82344 0.67 0.771778
Target:  5'- -gCGCUGCcggcgcacGUCGGCGUCGgcgcgcgcgcgCGCCGc -3'
miRNA:   3'- gaGCGACGau------UAGCCGCGGCa----------GCGGU- -5'
23843 5' -58 NC_005261.1 + 66235 0.67 0.769909
Target:  5'- -cCGCUGCUugaugccCGCCGUCGUCAc -3'
miRNA:   3'- gaGCGACGAuuagcc-GCGGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 78837 0.67 0.768034
Target:  5'- --aGCUGCgguacgccggCGGCGcCCGcCGCCGg -3'
miRNA:   3'- gagCGACGauua------GCCGC-GGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 120004 0.67 0.762382
Target:  5'- -gCGCcgGCUAcgCGGCcguguGCCG-CGCCGc -3'
miRNA:   3'- gaGCGa-CGAUuaGCCG-----CGGCaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.