miRNA display CGI


Results 41 - 60 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 122711 0.66 0.707369
Target:  5'- gCCGCc-GGCCgcGCCGUCGAuguucacguCGGCGc -3'
miRNA:   3'- gGGCGuuCCGG--UGGCGGCUu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 107301 0.66 0.716912
Target:  5'- cUCCGCcgcGGCCACgGCCGccGCGuGCa- -3'
miRNA:   3'- -GGGCGuu-CCGGUGgCGGCu-UGC-CGcc -5'
23844 3' -60.9 NC_005261.1 + 111465 0.66 0.697768
Target:  5'- gCCgGCGAGGCCAaaaGgCGGGCgGGUGa -3'
miRNA:   3'- -GGgCGUUCCGGUgg-CgGCUUG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 120072 0.66 0.688116
Target:  5'- uUCCGCAAcGGCUACC-CCGuggaggcuCGGCa- -3'
miRNA:   3'- -GGGCGUU-CCGGUGGcGGCuu------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 127491 0.66 0.707369
Target:  5'- -aCGCuggcGGCUGCCuGCCGGGCguacucGGCGGc -3'
miRNA:   3'- ggGCGuu--CCGGUGG-CGGCUUG------CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 112244 0.66 0.704494
Target:  5'- gCCGUgGAGGCCAUcaccacggaggucgCGCgGAuccugcucaaccGCGGCGGg -3'
miRNA:   3'- gGGCG-UUCCGGUG--------------GCGgCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 129312 0.66 0.688116
Target:  5'- cCCCGCGccugcgcuGGcGCCGCguCGCCGAccucGCcGCGGu -3'
miRNA:   3'- -GGGCGU--------UC-CGGUG--GCGGCU----UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28273 0.66 0.688116
Target:  5'- -gCGCuguuGCCGCCGCCGcGGCcGCGGu -3'
miRNA:   3'- ggGCGuuc-CGGUGGCGGC-UUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 10910 0.66 0.716912
Target:  5'- gCgGCAGcGCCGCCGCCG-GCcGCGa -3'
miRNA:   3'- gGgCGUUcCGGUGGCGGCuUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 69482 0.66 0.697768
Target:  5'- aUCCGCGcgaugcuGGUgCACCuguacGCCG-GCGGCGGg -3'
miRNA:   3'- -GGGCGUu------CCG-GUGG-----CGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 72202 0.66 0.711193
Target:  5'- gCCgCGCGcggcagaaagaacauGGuGUC-CCGCCGGcCGGCGGu -3'
miRNA:   3'- -GG-GCGU---------------UC-CGGuGGCGGCUuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 130235 0.66 0.707369
Target:  5'- gCCCGCucAGG-CGCCGCgCcAGCGGCu- -3'
miRNA:   3'- -GGGCGu-UCCgGUGGCG-GcUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 10221 0.66 0.688116
Target:  5'- gCCCGCGccugcccaggcGGGCCcgcgcacucGCCGCCGcgGGCcuGGCGc -3'
miRNA:   3'- -GGGCGU-----------UCCGG---------UGGCGGC--UUG--CCGCc -5'
23844 3' -60.9 NC_005261.1 + 98540 0.66 0.688116
Target:  5'- gCCGguAGGCUgcGCC-CgCGAAaucCGGCGGg -3'
miRNA:   3'- gGGCguUCCGG--UGGcG-GCUU---GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 51427 0.66 0.696804
Target:  5'- gCCUGCuGGGCCccggGCgCGCCGugaugaucaaccuGGCcGGCGGu -3'
miRNA:   3'- -GGGCGuUCCGG----UG-GCGGC-------------UUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 51308 0.66 0.697768
Target:  5'- cCUCGCGcacgccGGcGCCGCCGCCGccuuCGuCGGg -3'
miRNA:   3'- -GGGCGU------UC-CGGUGGCGGCuu--GCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 37609 0.66 0.688116
Target:  5'- cCCUGCAGcuccggugauGGCCucuaCGCCuAGCGGCGc -3'
miRNA:   3'- -GGGCGUU----------CCGGug--GCGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 116584 0.66 0.716912
Target:  5'- -aCGcCGAGGCCACCGCCaAGauGCu- -3'
miRNA:   3'- ggGC-GUUCCGGUGGCGGcUUgcCGcc -5'
23844 3' -60.9 NC_005261.1 + 89846 0.66 0.688116
Target:  5'- gCCGgAGGGCCGCgGCgucauCGGCGa -3'
miRNA:   3'- gGGCgUUCCGGUGgCGgcuu-GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 14354 0.66 0.697768
Target:  5'- gCgGCAGcaGCCGCgGCCGGgGCGGCGcGg -3'
miRNA:   3'- gGgCGUUc-CGGUGgCGGCU-UGCCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.