miRNA display CGI


Results 21 - 40 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 118817 0.66 0.707369
Target:  5'- gUCUGCGcccuGGGCgcggCACUGCCGcucuGCGGCGcGg -3'
miRNA:   3'- -GGGCGU----UCCG----GUGGCGGCu---UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 461 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 10221 0.66 0.688116
Target:  5'- gCCCGCGccugcccaggcGGGCCcgcgcacucGCCGCCGcgGGCcuGGCGc -3'
miRNA:   3'- -GGGCGU-----------UCCGG---------UGGCGGC--UUG--CCGCc -5'
23844 3' -60.9 NC_005261.1 + 101542 0.66 0.707369
Target:  5'- gCCGCcucGGCCGCCacgaccucGCCGAGgaugcgcuCGGCGc -3'
miRNA:   3'- gGGCGuu-CCGGUGG--------CGGCUU--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 22820 0.66 0.697768
Target:  5'- gCUGCc--GCCGCCGCCGu-UGGCGc -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCuuGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 105354 0.66 0.697768
Target:  5'- gCCGUGAGGCagGCCGU--GACaGGCGGc -3'
miRNA:   3'- gGGCGUUCCGg-UGGCGgcUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 75595 0.66 0.707369
Target:  5'- gCUCGCGcGcGCCGCgGaCgCGGACGGCGu -3'
miRNA:   3'- -GGGCGUuC-CGGUGgC-G-GCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 14354 0.66 0.697768
Target:  5'- gCgGCAGcaGCCGCgGCCGGgGCGGCGcGg -3'
miRNA:   3'- gGgCGUUc-CGGUGgCGGCU-UGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 74906 0.66 0.688116
Target:  5'- gCCCGCGcuGGCCGCgCGggGGAgGGCGa -3'
miRNA:   3'- -GGGCGUu-CCGGUG-GCggCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 112244 0.66 0.704494
Target:  5'- gCCGUgGAGGCCAUcaccacggaggucgCGCgGAuccugcucaaccGCGGCGGg -3'
miRNA:   3'- gGGCG-UUCCGGUG--------------GCGgCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 46380 0.66 0.688116
Target:  5'- gCUCGCucucggcgccGGCC-CCGUCGccGACGGUGGc -3'
miRNA:   3'- -GGGCGuu--------CCGGuGGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 69482 0.66 0.697768
Target:  5'- aUCCGCGcgaugcuGGUgCACCuguacGCCG-GCGGCGGg -3'
miRNA:   3'- -GGGCGUu------CCG-GUGG-----CGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 74405 0.66 0.687148
Target:  5'- cCCCGUuuucGGCCGCgggcgggaggGCCGAGgagagcgccccccCGGCGGg -3'
miRNA:   3'- -GGGCGuu--CCGGUGg---------CGGCUU-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 39546 0.66 0.707369
Target:  5'- gCCGCca-GCC-CCGCgCGcgcGCGGCGGu -3'
miRNA:   3'- gGGCGuucCGGuGGCG-GCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 89846 0.66 0.688116
Target:  5'- gCCGgAGGGCCGCgGCgucauCGGCGa -3'
miRNA:   3'- gGGCgUUCCGGUGgCGgcuu-GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 138132 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 28630 0.66 0.694877
Target:  5'- -gCGCAuGGUgGCCGCgGGGgagagugacgaggcCGGCGGg -3'
miRNA:   3'- ggGCGUuCCGgUGGCGgCUU--------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13338 0.66 0.688116
Target:  5'- aCUCGCGcGGCCAgCggucggcggagGCUGGGCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGUgG-----------CGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 111465 0.66 0.697768
Target:  5'- gCCgGCGAGGCCAaaaGgCGGGCgGGUGa -3'
miRNA:   3'- -GGgCGUUCCGGUgg-CgGCUUG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 28273 0.66 0.688116
Target:  5'- -gCGCuguuGCCGCCGCCGcGGCcGCGGu -3'
miRNA:   3'- ggGCGuuc-CGGUGGCGGC-UUGcCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.