miRNA display CGI


Results 21 - 40 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 2290 0.67 0.64916
Target:  5'- gCCGCcAGcGCCuCC-CCGGGCaGCGGg -3'
miRNA:   3'- gGGCGuUC-CGGuGGcGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2349 0.76 0.214608
Target:  5'- gUCCGCGaucugcgacauccAGGCCacgcGCCGCCGcAGCGGCGc -3'
miRNA:   3'- -GGGCGU-------------UCCGG----UGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 2409 0.8 0.120017
Target:  5'- gCCCGC-GGGCC-CCGCgCG-GCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGGuGGCG-GCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2434 0.67 0.665768
Target:  5'- gCCGCGAucucGGCCAgCGCCucggggucgaaggcGAGCGcCGGg -3'
miRNA:   3'- gGGCGUU----CCGGUgGCGG--------------CUUGCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 2542 0.68 0.600235
Target:  5'- gCCGCcAGcGCCGCggCGCUGGGC-GCGGg -3'
miRNA:   3'- gGGCGuUC-CGGUG--GCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2582 0.74 0.296453
Target:  5'- cCCCGgGcGGCacgcggcggaaGCCGCCGucgGCGGCGGg -3'
miRNA:   3'- -GGGCgUuCCGg----------UGGCGGCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2707 0.7 0.465581
Target:  5'- gCCgGCGccGGGCCccugGCCccgGCCGAcuugcgcuugcgccGCGGCGGg -3'
miRNA:   3'- -GGgCGU--UCCGG----UGG---CGGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2778 0.8 0.120017
Target:  5'- gCCCGCccccgaGGGGCUGCCGCCG-GCGGcCGGg -3'
miRNA:   3'- -GGGCG------UUCCGGUGGCGGCuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 2928 0.66 0.735791
Target:  5'- cCCCaGCAccuCCACCGCC--GCGGcCGGg -3'
miRNA:   3'- -GGG-CGUuccGGUGGCGGcuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 3151 0.77 0.195672
Target:  5'- cCCCGUccGAGGCC-CCGgCG-GCGGCGGc -3'
miRNA:   3'- -GGGCG--UUCCGGuGGCgGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3375 0.73 0.343138
Target:  5'- gCCGCGAgcgcGGCCGCCaGCCGcgccggcacuuccgcCGGCGGg -3'
miRNA:   3'- gGGCGUU----CCGGUGG-CGGCuu-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3427 0.66 0.697768
Target:  5'- -gCGCGcGGGCCAgCGUccaggCGGGCGcGCGGg -3'
miRNA:   3'- ggGCGU-UCCGGUgGCG-----GCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 3507 0.72 0.399768
Target:  5'- gCCGCcAGcGCgGCCGCCuccagcGCGGCGGc -3'
miRNA:   3'- gGGCGuUC-CGgUGGCGGcu----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3666 0.69 0.55184
Target:  5'- -gCGC-AGGCCGCgGCCGGcagGCcGCGGc -3'
miRNA:   3'- ggGCGuUCCGGUGgCGGCU---UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3711 0.72 0.368006
Target:  5'- aCCGgGAGcucagacgcGCCGCUGCCGGAcgcgcCGGCGGc -3'
miRNA:   3'- gGGCgUUC---------CGGUGGCGGCUU-----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 3847 0.67 0.678421
Target:  5'- gCgGCAgcGGcGCCGgCGCCGcGCGGcCGGc -3'
miRNA:   3'- gGgCGU--UC-CGGUgGCGGCuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 3914 0.68 0.574955
Target:  5'- gCCCGCGccGCCGgCGCCGgccuccggguaggccAugGGCGc -3'
miRNA:   3'- -GGGCGUucCGGUgGCGGC---------------UugCCGCc -5'
23844 3' -60.9 NC_005261.1 + 4058 0.68 0.600235
Target:  5'- uUCUGCGcGGCCAUgGCgucccCGAcCGGCGGc -3'
miRNA:   3'- -GGGCGUuCCGGUGgCG-----GCUuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 4303 0.74 0.289923
Target:  5'- cCCCGC--GGCCGCCGCguAGCGcGCGGc -3'
miRNA:   3'- -GGGCGuuCCGGUGGCGgcUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 4375 0.79 0.145963
Target:  5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3'
miRNA:   3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.