miRNA display CGI


Results 1 - 20 of 737 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 10 0.66 0.726389
Target:  5'- cCCCucguGCAgcGGGCC-CCGCgCGAcccCGGgGGg -3'
miRNA:   3'- -GGG----CGU--UCCGGuGGCG-GCUu--GCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 141 0.7 0.459362
Target:  5'- gCUCGCGGGGCUggcaggGCUGgCGGAguUGGCGGg -3'
miRNA:   3'- -GGGCGUUCCGG------UGGCgGCUU--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 237 0.77 0.200384
Target:  5'- cCCCGCGagcGGGCC-CgGCUGcGGCGGCGGc -3'
miRNA:   3'- -GGGCGU---UCCGGuGgCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 266 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 290 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 314 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 347 0.73 0.345348
Target:  5'- gCCCGCAGcccGG-CGCgGCCcGGCGGCGGu -3'
miRNA:   3'- -GGGCGUU---CCgGUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 461 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 966 0.72 0.375
Target:  5'- gCCCGUAgagcggcGGGCCGCgCGCaGAGCGGaGGa -3'
miRNA:   3'- -GGGCGU-------UCCGGUG-GCGgCUUGCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 1176 0.72 0.375783
Target:  5'- gCCCGCGccgcggccgGGGCCGggGCCGGGCGcggcGCGGa -3'
miRNA:   3'- -GGGCGU---------UCCGGUggCGGCUUGC----CGCC- -5'
23844 3' -60.9 NC_005261.1 + 1219 0.68 0.619787
Target:  5'- cCCCGcCGAuGCCGCCGUCGc-CGGCcccGGg -3'
miRNA:   3'- -GGGC-GUUcCGGUGGCGGCuuGCCG---CC- -5'
23844 3' -60.9 NC_005261.1 + 1292 0.78 0.165336
Target:  5'- gCCgGCGGGGCUcCCGUCGccGGCGGCGGc -3'
miRNA:   3'- -GGgCGUUCCGGuGGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1378 0.77 0.205194
Target:  5'- gUCCGCGucccAGGCCA-CGCCGGgcgccgcggccGCGGCGGc -3'
miRNA:   3'- -GGGCGU----UCCGGUgGCGGCU-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1484 0.79 0.146322
Target:  5'- gCCGCGcagaAGGCCACCGCC--GCGGcCGGc -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGcuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 1545 0.75 0.258967
Target:  5'- gCCCGCAggccAGGUaCACCgGCCGcAGCGGCGc -3'
miRNA:   3'- -GGGCGU----UCCG-GUGG-CGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 1661 0.69 0.52336
Target:  5'- cUCUGCGcGGCCAuguccuugcgcCCGUCGAGCcGCGGc -3'
miRNA:   3'- -GGGCGUuCCGGU-----------GGCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1774 0.67 0.629579
Target:  5'- -gCGCAcguuGGcGCCGCggcagaGCCGcAGCGGCGGc -3'
miRNA:   3'- ggGCGU----UC-CGGUGg-----CGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1875 0.68 0.610003
Target:  5'- gCCGCGAGGCCagcacggcGCgCGCC-AGCGcGCGc -3'
miRNA:   3'- gGGCGUUCCGG--------UG-GCGGcUUGC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 1908 0.67 0.668692
Target:  5'- gCCGCucAGGCCAgCGC---GCGGCGc -3'
miRNA:   3'- gGGCGu-UCCGGUgGCGgcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 2238 0.76 0.22178
Target:  5'- gCCGCGcaccggcggccacucAGGCCGCCggcgcucguccucGCCGGGCGGCGc -3'
miRNA:   3'- gGGCGU---------------UCCGGUGG-------------CGGCUUGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.