miRNA display CGI


Results 1 - 20 of 737 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 138132 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 138018 0.73 0.345348
Target:  5'- gCCCGCAGcccGG-CGCgGCCcGGCGGCGGu -3'
miRNA:   3'- -GGGCGUU---CCgGUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 137973 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 137949 0.67 0.658936
Target:  5'- gCUGCGGcGGCgGCUGC--GGCGGCGGc -3'
miRNA:   3'- gGGCGUU-CCGgUGGCGgcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 137920 0.77 0.200384
Target:  5'- cCCCGCGagcGGGCC-CgGCUGcGGCGGCGGc -3'
miRNA:   3'- -GGGCGU---UCCGGuGgCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 137824 0.7 0.459362
Target:  5'- gCUCGCGGGGCUggcaggGCUGgCGGAguUGGCGGg -3'
miRNA:   3'- -GGGCGUUCCGG------UGGCgGCUU--GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 137675 0.67 0.629579
Target:  5'- aCCC-CGGGGCCccccACCGCCccucguGCaGCGGg -3'
miRNA:   3'- -GGGcGUUCCGG----UGGCGGcu----UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 136598 0.7 0.495463
Target:  5'- gCCCgGCGcagcguggagcGGcGCgCGCgCGCCGAggGCGGCGGg -3'
miRNA:   3'- -GGG-CGU-----------UC-CG-GUG-GCGGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135672 0.72 0.368006
Target:  5'- cCUCGCucGAGGagcuCugCGCCGcGCGGCGGc -3'
miRNA:   3'- -GGGCG--UUCCg---GugGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135417 0.66 0.735791
Target:  5'- aCCGCAuguucgAGGUgcgcucgcaCGCCGCCcaGGCGGCGcGg -3'
miRNA:   3'- gGGCGU------UCCG---------GUGGCGGc-UUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 135258 0.71 0.423863
Target:  5'- gCgCGCGGauggacaucaugcGGCCugUGCaGAACGGCGGg -3'
miRNA:   3'- -GgGCGUU-------------CCGGugGCGgCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135215 0.73 0.345348
Target:  5'- -gCGCAgaGGGCCACgGCCGAGC-GCGu -3'
miRNA:   3'- ggGCGU--UCCGGUGgCGGCUUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 135109 0.67 0.668692
Target:  5'- -gCGCGAGGCgGaccccgcgucuCCGCaGcGCGGCGGg -3'
miRNA:   3'- ggGCGUUCCGgU-----------GGCGgCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135078 0.74 0.283508
Target:  5'- uCCgGCGgcGGGCuCGCgGCCcGGCGGCGGa -3'
miRNA:   3'- -GGgCGU--UCCG-GUGgCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 135037 0.76 0.230762
Target:  5'- gCgGCGAGGCCGaCGCCu-GCGGCGGc -3'
miRNA:   3'- gGgCGUUCCGGUgGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134979 0.73 0.345348
Target:  5'- aCgGCGAGGacgggGCCGCCGGggcgccccuggcGCGGCGGg -3'
miRNA:   3'- gGgCGUUCCgg---UGGCGGCU------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134936 0.67 0.668692
Target:  5'- aCCGCgGAGGaCGa-GCCGAugGGCGa -3'
miRNA:   3'- gGGCG-UUCCgGUggCGGCUugCCGCc -5'
23844 3' -60.9 NC_005261.1 + 134877 0.71 0.407978
Target:  5'- cCCCGC-GGGCCcCUGCUGugcguuCGGUGGu -3'
miRNA:   3'- -GGGCGuUCCGGuGGCGGCuu----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134755 0.68 0.619787
Target:  5'- aCCCGCGAc-CCGCgGCgGcAUGGCGGa -3'
miRNA:   3'- -GGGCGUUccGGUGgCGgCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134439 0.68 0.58077
Target:  5'- gCUCGCGGGGCUGCUGgUGAA-GGCGc -3'
miRNA:   3'- -GGGCGUUCCGGUGGCgGCUUgCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.