Results 1 - 20 of 737 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 33777 | 0.86 | 0.051722 |
Target: 5'- gCCCGCGgcgagcgcuGGGCC-CCGCgCGGGCGGCGGg -3' miRNA: 3'- -GGGCGU---------UCCGGuGGCG-GCUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 86918 | 0.85 | 0.060405 |
Target: 5'- aCCCGCGuccaccGCCGCCGCCGcgcGCGGCGGg -3' miRNA: 3'- -GGGCGUuc----CGGUGGCGGCu--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 71051 | 0.84 | 0.061983 |
Target: 5'- aCCaCGCcguGGGCCAgCCGCCGcGCGGCGGg -3' miRNA: 3'- -GG-GCGu--UCCGGU-GGCGGCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 55972 | 0.84 | 0.063274 |
Target: 5'- uCCCGCGAGcGCCGCCGUCGccaucggcaaccGCGGCGGg -3' miRNA: 3'- -GGGCGUUC-CGGUGGCGGCu-----------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 117362 | 0.84 | 0.068527 |
Target: 5'- gCCCGCAAGGCCGCCcuccuggaggcgcGCUGcuuCGGCGGg -3' miRNA: 3'- -GGGCGUUCCGGUGG-------------CGGCuu-GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 104445 | 0.84 | 0.07049 |
Target: 5'- gCCCGCGucGCCGCCGCCG-GCGGCGc -3' miRNA: 3'- -GGGCGUucCGGUGGCGGCuUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 29395 | 0.84 | 0.07049 |
Target: 5'- aUCCGCGAGGCgGCCGCgCGcuacGCGGCGGc -3' miRNA: 3'- -GGGCGUUCCGgUGGCG-GCu---UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 108342 | 0.83 | 0.080114 |
Target: 5'- aCCCGCGccaGGGCCGCCGCCGucGCaGGCGc -3' miRNA: 3'- -GGGCGU---UCCGGUGGCGGCu-UG-CCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 12341 | 0.82 | 0.093323 |
Target: 5'- gCCgGCGcGGCCGCCGCC--GCGGCGGc -3' miRNA: 3'- -GGgCGUuCCGGUGGCGGcuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 103871 | 0.81 | 0.098168 |
Target: 5'- gCgGCGGGGCggCGCCGCCGGGCGGCGc -3' miRNA: 3'- gGgCGUUCCG--GUGGCGGCUUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 44023 | 0.81 | 0.105882 |
Target: 5'- -gCGCGgcGGGCgGCCGCCGcGCGGCGGc -3' miRNA: 3'- ggGCGU--UCCGgUGGCGGCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 102932 | 0.81 | 0.108578 |
Target: 5'- uCgCGCAGcGCCGCCGCCGcuGCGGCGGc -3' miRNA: 3'- -GgGCGUUcCGGUGGCGGCu-UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 93940 | 0.81 | 0.111338 |
Target: 5'- gUCCGCGGGcGCCGCCuCCGGGCGGuCGGc -3' miRNA: 3'- -GGGCGUUC-CGGUGGcGGCUUGCC-GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 60232 | 0.8 | 0.114164 |
Target: 5'- gCCCcCAGGGCCGCCuCCGccGCGGCGGg -3' miRNA: 3'- -GGGcGUUCCGGUGGcGGCu-UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 90766 | 0.8 | 0.114164 |
Target: 5'- uCCC-CGAGGCCGCCgagGCCGcuGCGGCGGc -3' miRNA: 3'- -GGGcGUUCCGGUGG---CGGCu-UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2409 | 0.8 | 0.120017 |
Target: 5'- gCCCGC-GGGCC-CCGCgCG-GCGGCGGg -3' miRNA: 3'- -GGGCGuUCCGGuGGCG-GCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 44279 | 0.8 | 0.120017 |
Target: 5'- --gGCGGGGcCCGCCGCC-AGCGGCGGg -3' miRNA: 3'- gggCGUUCC-GGUGGCGGcUUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2778 | 0.8 | 0.120017 |
Target: 5'- gCCCGCccccgaGGGGCUGCCGCCG-GCGGcCGGg -3' miRNA: 3'- -GGGCG------UUCCGGUGGCGGCuUGCC-GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 16287 | 0.8 | 0.123048 |
Target: 5'- gCCCGgGGGGgCGCCGUCGGgcccaGCGGCGGc -3' miRNA: 3'- -GGGCgUUCCgGUGGCGGCU-----UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 127303 | 0.8 | 0.123048 |
Target: 5'- cCCCGCcggcuggcgguGGGGCCcuGCCGCCcgcgggggccgGAGCGGCGGg -3' miRNA: 3'- -GGGCG-----------UUCCGG--UGGCGG-----------CUUGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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