miRNA display CGI


Results 1 - 20 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 10221 0.66 0.688116
Target:  5'- gCCCGCGccugcccaggcGGGCCcgcgcacucGCCGCCGcgGGCcuGGCGc -3'
miRNA:   3'- -GGGCGU-----------UCCGG---------UGGCGGC--UUG--CCGCc -5'
23844 3' -60.9 NC_005261.1 + 18200 0.66 0.688116
Target:  5'- aCCC-CAGGGCCG-CGCCGAuccccCGGUc- -3'
miRNA:   3'- -GGGcGUUCCGGUgGCGGCUu----GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 106841 0.66 0.688116
Target:  5'- -gCGCGucguccAGcCCGCCGCCuGGGgGGCGGg -3'
miRNA:   3'- ggGCGU------UCcGGUGGCGG-CUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 120072 0.66 0.688116
Target:  5'- uUCCGCAAcGGCUACC-CCGuggaggcuCGGCa- -3'
miRNA:   3'- -GGGCGUU-CCGGUGGcGGCuu------GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 74405 0.66 0.687148
Target:  5'- cCCCGUuuucGGCCGCgggcgggaggGCCGAGgagagcgccccccCGGCGGg -3'
miRNA:   3'- -GGGCGuu--CCGGUGg---------CGGCUU-------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 84939 0.66 0.688116
Target:  5'- uCgCGCAGcaccuccucGGCgGCCGCCGAGgCGuCGGg -3'
miRNA:   3'- -GgGCGUU---------CCGgUGGCGGCUU-GCcGCC- -5'
23844 3' -60.9 NC_005261.1 + 70948 0.66 0.688116
Target:  5'- gUCCGCcGGgaacGCCGaCGCCGcGACGGCGa -3'
miRNA:   3'- -GGGCGuUC----CGGUgGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 37609 0.66 0.688116
Target:  5'- cCCUGCAGcuccggugauGGCCucuaCGCCuAGCGGCGc -3'
miRNA:   3'- -GGGCGUU----------CCGGug--GCGGcUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 461 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 28630 0.66 0.694877
Target:  5'- -gCGCAuGGUgGCCGCgGGGgagagugacgaggcCGGCGGg -3'
miRNA:   3'- ggGCGUuCCGgUGGCGgCUU--------------GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 103912 0.66 0.688116
Target:  5'- aCCCGC---GCCGCCagGUCGGgcGCGGCGu -3'
miRNA:   3'- -GGGCGuucCGGUGG--CGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 98540 0.66 0.688116
Target:  5'- gCCGguAGGCUgcGCC-CgCGAAaucCGGCGGg -3'
miRNA:   3'- gGGCguUCCGG--UGGcG-GCUU---GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28273 0.66 0.688116
Target:  5'- -gCGCuguuGCCGCCGCCGcGGCcGCGGu -3'
miRNA:   3'- ggGCGuuc-CGGUGGCGGC-UUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 13338 0.66 0.688116
Target:  5'- aCUCGCGcGGCCAgCggucggcggagGCUGGGCGGCa- -3'
miRNA:   3'- -GGGCGUuCCGGUgG-----------CGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 101772 0.66 0.745111
Target:  5'- gCCCGCcuccaGCgCGCgUGCCGccCGGCGGg -3'
miRNA:   3'- -GGGCGuuc--CG-GUG-GCGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 74906 0.66 0.688116
Target:  5'- gCCCGCGcuGGCCGCgCGggGGAgGGCGa -3'
miRNA:   3'- -GGGCGUu-CCGGUG-GCggCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 129312 0.66 0.688116
Target:  5'- cCCCGCGccugcgcuGGcGCCGCguCGCCGAccucGCcGCGGu -3'
miRNA:   3'- -GGGCGU--------UC-CGGUG--GCGGCU----UGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 46380 0.66 0.688116
Target:  5'- gCUCGCucucggcgccGGCC-CCGUCGccGACGGUGGc -3'
miRNA:   3'- -GGGCGuu--------CCGGuGGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 138132 0.66 0.688116
Target:  5'- gCCGCGAcGGCCG--GCgGGAUGGCGcGg -3'
miRNA:   3'- gGGCGUU-CCGGUggCGgCUUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 89846 0.66 0.688116
Target:  5'- gCCGgAGGGCCGCgGCgucauCGGCGa -3'
miRNA:   3'- gGGCgUUCCGGUGgCGgcuu-GCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.