miRNA display CGI


Results 1 - 20 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 101772 0.66 0.745111
Target:  5'- gCCCGCcuccaGCgCGCgUGCCGccCGGCGGg -3'
miRNA:   3'- -GGGCGuuc--CG-GUG-GCGGCuuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 93940 0.81 0.111338
Target:  5'- gUCCGCGGGcGCCGCCuCCGGGCGGuCGGc -3'
miRNA:   3'- -GGGCGUUC-CGGUGGcGGCUUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 60232 0.8 0.114164
Target:  5'- gCCCcCAGGGCCGCCuCCGccGCGGCGGg -3'
miRNA:   3'- -GGGcGUUCCGGUGGcGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 90766 0.8 0.114164
Target:  5'- uCCC-CGAGGCCGCCgagGCCGcuGCGGCGGc -3'
miRNA:   3'- -GGGcGUUCCGGUGG---CGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2778 0.8 0.120017
Target:  5'- gCCCGCccccgaGGGGCUGCCGCCG-GCGGcCGGg -3'
miRNA:   3'- -GGGCG------UUCCGGUGGCGGCuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 44279 0.8 0.120017
Target:  5'- --gGCGGGGcCCGCCGCC-AGCGGCGGg -3'
miRNA:   3'- gggCGUUCC-GGUGGCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 2409 0.8 0.120017
Target:  5'- gCCCGC-GGGCC-CCGCgCG-GCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGGuGGCG-GCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 28593 0.8 0.123048
Target:  5'- gCCgGC-GGGCCGCCcgcGCCGAGCuGGCGGa -3'
miRNA:   3'- -GGgCGuUCCGGUGG---CGGCUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 16287 0.8 0.123048
Target:  5'- gCCCGgGGGGgCGCCGUCGGgcccaGCGGCGGc -3'
miRNA:   3'- -GGGCgUUCCgGUGGCGGCU-----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 102932 0.81 0.108578
Target:  5'- uCgCGCAGcGCCGCCGCCGcuGCGGCGGc -3'
miRNA:   3'- -GgGCGUUcCGGUGGCGGCu-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 44023 0.81 0.105882
Target:  5'- -gCGCGgcGGGCgGCCGCCGcGCGGCGGc -3'
miRNA:   3'- ggGCGU--UCCGgUGGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 103871 0.81 0.098168
Target:  5'- gCgGCGGGGCggCGCCGCCGGGCGGCGc -3'
miRNA:   3'- gGgCGUUCCG--GUGGCGGCUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 86918 0.85 0.060405
Target:  5'- aCCCGCGuccaccGCCGCCGCCGcgcGCGGCGGg -3'
miRNA:   3'- -GGGCGUuc----CGGUGGCGGCu--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 71051 0.84 0.061983
Target:  5'- aCCaCGCcguGGGCCAgCCGCCGcGCGGCGGg -3'
miRNA:   3'- -GG-GCGu--UCCGGU-GGCGGCuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 55972 0.84 0.063274
Target:  5'- uCCCGCGAGcGCCGCCGUCGccaucggcaaccGCGGCGGg -3'
miRNA:   3'- -GGGCGUUC-CGGUGGCGGCu-----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 117362 0.84 0.068527
Target:  5'- gCCCGCAAGGCCGCCcuccuggaggcgcGCUGcuuCGGCGGg -3'
miRNA:   3'- -GGGCGUUCCGGUGG-------------CGGCuu-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29395 0.84 0.07049
Target:  5'- aUCCGCGAGGCgGCCGCgCGcuacGCGGCGGc -3'
miRNA:   3'- -GGGCGUUCCGgUGGCG-GCu---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 104445 0.84 0.07049
Target:  5'- gCCCGCGucGCCGCCGCCG-GCGGCGc -3'
miRNA:   3'- -GGGCGUucCGGUGGCGGCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 108342 0.83 0.080114
Target:  5'- aCCCGCGccaGGGCCGCCGCCGucGCaGGCGc -3'
miRNA:   3'- -GGGCGU---UCCGGUGGCGGCu-UG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 12341 0.82 0.093323
Target:  5'- gCCgGCGcGGCCGCCGCC--GCGGCGGc -3'
miRNA:   3'- -GGgCGUuCCGGUGGCGGcuUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.