miRNA display CGI


Results 21 - 40 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 28593 0.8 0.123048
Target:  5'- gCCgGC-GGGCCGCCcgcGCCGAGCuGGCGGa -3'
miRNA:   3'- -GGgCGuUCCGGUGG---CGGCUUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 97675 0.8 0.126149
Target:  5'- gUCCGCGGGGCUugggcgggGCUGCCgGGGCGGUGGg -3'
miRNA:   3'- -GGGCGUUCCGG--------UGGCGG-CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 132904 0.8 0.126149
Target:  5'- gCCGC-GGGCgG-CGCCGAGCGGCGGc -3'
miRNA:   3'- gGGCGuUCCGgUgGCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134345 0.8 0.129002
Target:  5'- aCCGCAAGcccccgcGCCGCCGCgCGGGgGGCGGc -3'
miRNA:   3'- gGGCGUUC-------CGGUGGCG-GCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 62422 0.8 0.129322
Target:  5'- gCCCGcCGAGGCCAgcgcgagccggUCGCCGGgccccagcaGCGGCGGa -3'
miRNA:   3'- -GGGC-GUUCCGGU-----------GGCGGCU---------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 92219 0.79 0.132569
Target:  5'- gCCgGCGucgucGGCC-CCGCCGAGCGcGCGGa -3'
miRNA:   3'- -GGgCGUu----CCGGuGGCGGCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 49236 0.79 0.132569
Target:  5'- gCgCGCAGgucGGCCGCCGCCGcGGCGGCGu -3'
miRNA:   3'- -GgGCGUU---CCGGUGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 59483 0.79 0.135891
Target:  5'- gCCgGCGcGGCCGCCGCgCcAGCGGCGGc -3'
miRNA:   3'- -GGgCGUuCCGGUGGCG-GcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 109324 0.79 0.135891
Target:  5'- cUCCGCGAGcGCgGCCGCgGGGuCGGCGGc -3'
miRNA:   3'- -GGGCGUUC-CGgUGGCGgCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 91714 0.79 0.13929
Target:  5'- gCUGCAAGGCCGgcUCGCC--GCGGCGGg -3'
miRNA:   3'- gGGCGUUCCGGU--GGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 55157 0.79 0.142766
Target:  5'- gCgCGCGAGcGCCGCCGCCGGcggcucgcGgGGCGGa -3'
miRNA:   3'- -GgGCGUUC-CGGUGGCGGCU--------UgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 75453 0.79 0.142766
Target:  5'- uCCCaCGGGGCCAguuccaggCGCCGGGCGGCGGc -3'
miRNA:   3'- -GGGcGUUCCGGUg-------GCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 4375 0.79 0.145963
Target:  5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3'
miRNA:   3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 21783 0.79 0.145963
Target:  5'- gCCGCGgcgcGGGCCgccgcaGCCGCCGGccgggccgggcccGCGGCGGg -3'
miRNA:   3'- gGGCGU----UCCGG------UGGCGGCU-------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 98298 0.79 0.146322
Target:  5'- gUCCGCGgccucgggggcgGGcGCCGCCGCC-AGCGGCGGc -3'
miRNA:   3'- -GGGCGU------------UC-CGGUGGCGGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 1484 0.79 0.146322
Target:  5'- gCCGCGcagaAGGCCACCGCC--GCGGcCGGc -3'
miRNA:   3'- gGGCGU----UCCGGUGGCGGcuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 126995 0.79 0.149958
Target:  5'- aCCGUcaGGGGCCGaccCCGCCGcaGGCGGCGGc -3'
miRNA:   3'- gGGCG--UUCCGGU---GGCGGC--UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 33363 0.78 0.153676
Target:  5'- gCCGCcGGGCCG-CGCCGGGCuGCGGg -3'
miRNA:   3'- gGGCGuUCCGGUgGCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 107675 0.78 0.153676
Target:  5'- cCCCGCcGGGCguuGCCGCC--GCGGCGGg -3'
miRNA:   3'- -GGGCGuUCCGg--UGGCGGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 31102 0.78 0.157477
Target:  5'- gCCGCccggcGGCCccGCCGCCG-ACGGCGGc -3'
miRNA:   3'- gGGCGuu---CCGG--UGGCGGCuUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.