miRNA display CGI


Results 21 - 40 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 68639 0.66 0.735791
Target:  5'- gCCCGCGaccgAGGUcaucguCACCGCCGcccgcgccgcCGGCGu -3'
miRNA:   3'- -GGGCGU----UCCG------GUGGCGGCuu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 22965 0.66 0.735791
Target:  5'- -aCGaCGAGGCCGagGaCCGGgaggagGCGGCGGa -3'
miRNA:   3'- ggGC-GUUCCGGUggC-GGCU------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 29824 0.66 0.735791
Target:  5'- gCCCGC---GCCGCgcuCGCCGAGCuGCGc -3'
miRNA:   3'- -GGGCGuucCGGUG---GCGGCUUGcCGCc -5'
23844 3' -60.9 NC_005261.1 + 106801 0.66 0.735791
Target:  5'- gCCCGCA---CCAgCGCCGAGUGGCc- -3'
miRNA:   3'- -GGGCGUuccGGUgGCGGCUUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 63342 0.66 0.735791
Target:  5'- gCUGCGAGGcCCACgGgUucACGGUGGc -3'
miRNA:   3'- gGGCGUUCC-GGUGgCgGcuUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 23354 0.66 0.735791
Target:  5'- gCgCGCGugucGGCCGugacaaaCGCCGAGcCGGUGGc -3'
miRNA:   3'- -GgGCGUu---CCGGUg------GCGGCUU-GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 116496 0.66 0.735791
Target:  5'- -gCGCGcGGUauaaagagCGCCGCCGcGGCGGCGc -3'
miRNA:   3'- ggGCGUuCCG--------GUGGCGGC-UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 135417 0.66 0.735791
Target:  5'- aCCGCAuguucgAGGUgcgcucgcaCGCCGCCcaGGCGGCGcGg -3'
miRNA:   3'- gGGCGU------UCCG---------GUGGCGGc-UUGCCGC-C- -5'
23844 3' -60.9 NC_005261.1 + 91487 0.66 0.735791
Target:  5'- gCCGCcgcGGCCGCCGCCcgcccCGcGCGc -3'
miRNA:   3'- gGGCGuu-CCGGUGGCGGcuu--GC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 50823 0.66 0.735791
Target:  5'- cUCCGCGcGGCUuggcGCCGC-GAGCuGGCGc -3'
miRNA:   3'- -GGGCGUuCCGG----UGGCGgCUUG-CCGCc -5'
23844 3' -60.9 NC_005261.1 + 107706 0.66 0.735791
Target:  5'- gCCGCcgaacGUCGCUGCCGcGGCaGGCGGc -3'
miRNA:   3'- gGGCGuuc--CGGUGGCGGC-UUG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 48822 0.66 0.735791
Target:  5'- gUCCGCGAcgccgucgucGGCCccGCCGCCGcGCaGCa- -3'
miRNA:   3'- -GGGCGUU----------CCGG--UGGCGGCuUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 130180 0.66 0.735791
Target:  5'- gCCggcaGCAGGGagcugacggccaCCACCGCCuccuGCaGGCGGa -3'
miRNA:   3'- -GGg---CGUUCC------------GGUGGCGGcu--UG-CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 14449 0.66 0.735791
Target:  5'- gCUCGCGGGGCgCGCgGCgGAGCucGCGc -3'
miRNA:   3'- -GGGCGUUCCG-GUGgCGgCUUGc-CGCc -5'
23844 3' -60.9 NC_005261.1 + 33976 0.66 0.735791
Target:  5'- gCCGCc--GCCGCCGCCGcccCGGagcuGGg -3'
miRNA:   3'- gGGCGuucCGGUGGCGGCuu-GCCg---CC- -5'
23844 3' -60.9 NC_005261.1 + 2928 0.66 0.735791
Target:  5'- cCCCaGCAccuCCACCGCC--GCGGcCGGg -3'
miRNA:   3'- -GGG-CGUuccGGUGGCGGcuUGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 59135 0.66 0.735791
Target:  5'- aCCGacucAGGCCggcgcGCC-CCGGGCGcGCGGc -3'
miRNA:   3'- gGGCgu--UCCGG-----UGGcGGCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 126933 0.66 0.735791
Target:  5'- uCCagcaGCGcGGCCAggggCGCCGGGC-GCGGg -3'
miRNA:   3'- -GGg---CGUuCCGGUg---GCGGCUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 36554 0.66 0.735791
Target:  5'- --gGCGGGGCgaGCCuaGCCGAGCuGaGCGGg -3'
miRNA:   3'- gggCGUUCCGg-UGG--CGGCUUG-C-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 24179 0.66 0.734854
Target:  5'- uUCCGgGGGGUCGUCGgCGAGgcuccaggaucguCGGCGGg -3'
miRNA:   3'- -GGGCgUUCCGGUGGCgGCUU-------------GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.