miRNA display CGI


Results 41 - 60 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 19757 0.66 0.734854
Target:  5'- uCCCGCGcgggcgcGGGCC-CCGUcgccuCGAACacGCGGc -3'
miRNA:   3'- -GGGCGU-------UCCGGuGGCG-----GCUUGc-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 75124 0.66 0.732979
Target:  5'- gCUGCAAgaccGGCUgAUCGCCGAGCGcccccuggcgacgcGCGGc -3'
miRNA:   3'- gGGCGUU----CCGG-UGGCGGCUUGC--------------CGCC- -5'
23844 3' -60.9 NC_005261.1 + 109639 0.66 0.730159
Target:  5'- gCuuGC--GGCCGCCGCCccagacaccuaacccGAGC-GCGGg -3'
miRNA:   3'- -GggCGuuCCGGUGGCGG---------------CUUGcCGCC- -5'
23844 3' -60.9 NC_005261.1 + 133830 0.66 0.726389
Target:  5'- gCUGCGcGGCCGCgugcgCGCCGuggcCGGCGc -3'
miRNA:   3'- gGGCGUuCCGGUG-----GCGGCuu--GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 54976 0.66 0.726389
Target:  5'- aCUCGCAAaggucuuuacGGCCA-CGCCG-GCGGCc- -3'
miRNA:   3'- -GGGCGUU----------CCGGUgGCGGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 130133 0.66 0.726389
Target:  5'- gCCGCGc-GCCGuCCGCCGAGC-GCa- -3'
miRNA:   3'- gGGCGUucCGGU-GGCGGCUUGcCGcc -5'
23844 3' -60.9 NC_005261.1 + 94604 0.66 0.726389
Target:  5'- gCCCaCGAGcgcgcgcccucGCCGCCGCCGGcgccgucguCGGCGc -3'
miRNA:   3'- -GGGcGUUC-----------CGGUGGCGGCUu--------GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 27708 0.66 0.726389
Target:  5'- gCUCGCcGGaGCCcucGCCGCgGGAgGaGCGGa -3'
miRNA:   3'- -GGGCGuUC-CGG---UGGCGgCUUgC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 79985 0.66 0.726389
Target:  5'- aCUGCAGcGCCGCgaacucgGCCGAgcucACGGUGGu -3'
miRNA:   3'- gGGCGUUcCGGUGg------CGGCU----UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 56393 0.66 0.726389
Target:  5'- gCUCGCGGGGgcccugggcgcCCugCGCUucGCGGCGc -3'
miRNA:   3'- -GGGCGUUCC-----------GGugGCGGcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 49620 0.66 0.726389
Target:  5'- -aCGCAcaGCuCGCCGUCGAcgaGCGaGCGGa -3'
miRNA:   3'- ggGCGUucCG-GUGGCGGCU---UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 65361 0.66 0.726389
Target:  5'- -aCGCGGGGCauggccCGCaCGcCCGGcauuaccuGCGGCGGg -3'
miRNA:   3'- ggGCGUUCCG------GUG-GC-GGCU--------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 126538 0.66 0.726389
Target:  5'- gCCGCGccucGGCCACgCGCCGccguCGcGCGc -3'
miRNA:   3'- gGGCGUu---CCGGUG-GCGGCuu--GC-CGCc -5'
23844 3' -60.9 NC_005261.1 + 127576 0.66 0.726389
Target:  5'- gCCCGCAccAGGgCGCC-CUGGGCGucuuCGGg -3'
miRNA:   3'- -GGGCGU--UCCgGUGGcGGCUUGCc---GCC- -5'
23844 3' -60.9 NC_005261.1 + 29623 0.66 0.726389
Target:  5'- aCCGgGAGcgugacggcGCCGCUGCCGc-CGGuCGGg -3'
miRNA:   3'- gGGCgUUC---------CGGUGGCGGCuuGCC-GCC- -5'
23844 3' -60.9 NC_005261.1 + 72298 0.66 0.726389
Target:  5'- uUCGCGacguGGGCCACgCGCuCGAugccccGCGGCc- -3'
miRNA:   3'- gGGCGU----UCCGGUG-GCG-GCU------UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 10 0.66 0.726389
Target:  5'- cCCCucguGCAgcGGGCC-CCGCgCGAcccCGGgGGg -3'
miRNA:   3'- -GGG----CGU--UCCGGuGGCG-GCUu--GCCgCC- -5'
23844 3' -60.9 NC_005261.1 + 12754 0.66 0.726389
Target:  5'- gCCCgGCGAGGUCGuaGgCGG-CGGUGGc -3'
miRNA:   3'- -GGG-CGUUCCGGUggCgGCUuGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 103015 0.66 0.726389
Target:  5'- cUCCGCGuGGCUcUCGaaGAACGcGCGGn -3'
miRNA:   3'- -GGGCGUuCCGGuGGCggCUUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 90730 0.66 0.726389
Target:  5'- aCCGCuGGGCCG-CGCCuGAGgcgcUGGCGcGg -3'
miRNA:   3'- gGGCGuUCCGGUgGCGG-CUU----GCCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.