miRNA display CGI


Results 41 - 60 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 4417 0.73 0.338021
Target:  5'- gCUGCcGGGCCAggccUCGCCGGAgGGCGu -3'
miRNA:   3'- gGGCGuUCCGGU----GGCGGCUUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 4521 0.69 0.532795
Target:  5'- gCCCGCGcGGgCGCCGCgGcGAgGGCGc -3'
miRNA:   3'- -GGGCGUuCCgGUGGCGgC-UUgCCGCc -5'
23844 3' -60.9 NC_005261.1 + 4822 0.68 0.610003
Target:  5'- cUCCGCGuugggcgcAGGCggcggcguccgCGCCGCagccucaaGGGCGGCGGc -3'
miRNA:   3'- -GGGCGU--------UCCG-----------GUGGCGg-------CUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 4883 0.7 0.495463
Target:  5'- gCCGCcucaGCCGCgGCCGccucggcuucGGCGGCGGc -3'
miRNA:   3'- gGGCGuuc-CGGUGgCGGC----------UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 4943 0.67 0.639372
Target:  5'- gCCCGCGccgcGGCCcaggcGCCcCCGGccGCGGCGu -3'
miRNA:   3'- -GGGCGUu---CCGG-----UGGcGGCU--UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 5134 0.67 0.639372
Target:  5'- gCCCGCcGGcGCuCGCgCGCCucggccCGGCGGg -3'
miRNA:   3'- -GGGCGuUC-CG-GUG-GCGGcuu---GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 5264 0.68 0.570119
Target:  5'- gCCCGCcggGAGacGCCAUgGCCGGccgcgguGCGcGCGGg -3'
miRNA:   3'- -GGGCG---UUC--CGGUGgCGGCU-------UGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 5417 0.7 0.486313
Target:  5'- gCCGCGaacgaAGGagacgaCCGCgGCCGcGGCGGCGGc -3'
miRNA:   3'- gGGCGU-----UCC------GGUGgCGGC-UUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 5522 0.74 0.303766
Target:  5'- gCgGCGAGGCCGCCggcuucggcgcgcaGCgagacggggggcgccCGAGCGGCGGa -3'
miRNA:   3'- gGgCGUUCCGGUGG--------------CG---------------GCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 5706 0.68 0.590489
Target:  5'- cCCCGCc-GGCCcccuuUCGCgGAGaggcCGGCGGg -3'
miRNA:   3'- -GGGCGuuCCGGu----GGCGgCUU----GCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 5817 0.68 0.590489
Target:  5'- cUCgGCAGcggcGGCCgauGCgCGCCGGguuACGGCGGc -3'
miRNA:   3'- -GGgCGUU----CCGG---UG-GCGGCU---UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 6058 0.66 0.745111
Target:  5'- uCCCaaaGGGGCC-CCucgucCCGAcgGCGGCGGc -3'
miRNA:   3'- -GGGcg-UUCCGGuGGc----GGCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 6261 0.68 0.571086
Target:  5'- cCCCGCGGGGCggccCGCCGCCaAACucauuguaauauGcGCGGc -3'
miRNA:   3'- -GGGCGUUCCG----GUGGCGGcUUG------------C-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 6407 0.66 0.716912
Target:  5'- aCCCGCGcgcguuGGCCcgGCCuGCuCGcGAgGGCGGu -3'
miRNA:   3'- -GGGCGUu-----CCGG--UGG-CG-GC-UUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 8554 0.69 0.52336
Target:  5'- aCCCGCucGGCCGCC-CCGGGaaGUGa -3'
miRNA:   3'- -GGGCGuuCCGGUGGcGGCUUgcCGCc -5'
23844 3' -60.9 NC_005261.1 + 8806 0.7 0.495463
Target:  5'- gCCGCcgagggcuugaaGGGGCgC-CCGCCGGGCaagggGGCGGg -3'
miRNA:   3'- gGGCG------------UUCCG-GuGGCGGCUUG-----CCGCC- -5'
23844 3' -60.9 NC_005261.1 + 9115 0.69 0.55184
Target:  5'- gCCGagAGGGCCGCCGggaCUGGG-GGCGGg -3'
miRNA:   3'- gGGCg-UUCCGGUGGC---GGCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 10004 0.69 0.56144
Target:  5'- aCCCGCuu-GCCAcCCGaCCGGGCGGgccucgcguCGGg -3'
miRNA:   3'- -GGGCGuucCGGU-GGC-GGCUUGCC---------GCC- -5'
23844 3' -60.9 NC_005261.1 + 10096 0.67 0.678421
Target:  5'- cCCCGCcgcGCC-CCGgC-AGCGGCGGc -3'
miRNA:   3'- -GGGCGuucCGGuGGCgGcUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 10221 0.66 0.688116
Target:  5'- gCCCGCGccugcccaggcGGGCCcgcgcacucGCCGCCGcgGGCcuGGCGc -3'
miRNA:   3'- -GGGCGU-----------UCCGG---------UGGCGGC--UUG--CCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.