miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 69234 0.66 0.989624
Target:  5'- cGCUggggCGGUUcGCCGAGGcgcUGGCCC-GCg -3'
miRNA:   3'- -CGG----GUCAAaCGGUUCCu--AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 29157 0.69 0.938319
Target:  5'- cGCCCGcGgauccaGCCAAGGccagGGCCCgGCg -3'
miRNA:   3'- -CGGGU-Caaa---CGGUUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 133290 0.69 0.938319
Target:  5'- cGCCCGccucGUggccGCCAAGGAcGACUggCUGCu -3'
miRNA:   3'- -CGGGU----CAaa--CGGUUCCUaUUGG--GACG- -5'
23844 5' -51.1 NC_005261.1 + 27274 0.69 0.943189
Target:  5'- aGCCCGGccgGCCcccGGAccGCCCUcGCg -3'
miRNA:   3'- -CGGGUCaaaCGGuu-CCUauUGGGA-CG- -5'
23844 5' -51.1 NC_005261.1 + 83032 0.69 0.943189
Target:  5'- cCCCGGgaggGCCGcucgccgcgggaGGGGgcuCCCUGCg -3'
miRNA:   3'- cGGGUCaaa-CGGU------------UCCUauuGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 85351 0.69 0.947801
Target:  5'- aGCCCAGcg-GCCcgcuGAGGAUGuucgcgccgccGCCCUcggGCu -3'
miRNA:   3'- -CGGGUCaaaCGG----UUCCUAU-----------UGGGA---CG- -5'
23844 5' -51.1 NC_005261.1 + 36890 0.69 0.947801
Target:  5'- cGCCCuuccucGCCAAGGcgcGACCCcGCg -3'
miRNA:   3'- -CGGGucaaa-CGGUUCCua-UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 39368 0.69 0.947801
Target:  5'- cGCCUcaucGGcg-GCCGGGGAgggcGGCCCUGg -3'
miRNA:   3'- -CGGG----UCaaaCGGUUCCUa---UUGGGACg -5'
23844 5' -51.1 NC_005261.1 + 88602 0.69 0.947801
Target:  5'- gGCCCGGcggcGCCAcGGucGUGACgCUGCu -3'
miRNA:   3'- -CGGGUCaaa-CGGUuCC--UAUUGgGACG- -5'
23844 5' -51.1 NC_005261.1 + 47244 0.69 0.927799
Target:  5'- cCCCAGaaaGCCGAGGA----CCUGCg -3'
miRNA:   3'- cGGGUCaaaCGGUUCCUauugGGACG- -5'
23844 5' -51.1 NC_005261.1 + 35700 0.69 0.927799
Target:  5'- cCCCGGUggGCCGGGGGcucgguggcGGCCCcgGCc -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUa--------UUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 125682 0.7 0.896941
Target:  5'- cGCCgaaugGGUUUGCCGGGcuUGGCCCgGCg -3'
miRNA:   3'- -CGGg----UCAAACGGUUCcuAUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 22676 0.76 0.645103
Target:  5'- cGCCCgAGUgccGCCGGGGGacgGGCCCgGCg -3'
miRNA:   3'- -CGGG-UCAaa-CGGUUCCUa--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 1251 0.75 0.666461
Target:  5'- aGCCCgAGUccgUGcCCGGGGGUGACUgUGCc -3'
miRNA:   3'- -CGGG-UCAa--AC-GGUUCCUAUUGGgACG- -5'
23844 5' -51.1 NC_005261.1 + 28523 0.75 0.666461
Target:  5'- gGCCCGGagggggGCCcgGAGGAggacccGGCCCUGCu -3'
miRNA:   3'- -CGGGUCaaa---CGG--UUCCUa-----UUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 44925 0.73 0.799596
Target:  5'- gGCCCAGcc-GCCGAGGAgaguucggcgcuggaGAgCCUGCu -3'
miRNA:   3'- -CGGGUCaaaCGGUUCCUa--------------UUgGGACG- -5'
23844 5' -51.1 NC_005261.1 + 29125 0.72 0.85169
Target:  5'- aGCCCuGgc-GCCGGGGGgcGCCCcGCc -3'
miRNA:   3'- -CGGGuCaaaCGGUUCCUauUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 121177 0.71 0.867715
Target:  5'- cGCUCGGUgcacgggGCCGGGGccgGGCCCgggGCc -3'
miRNA:   3'- -CGGGUCAaa-----CGGUUCCua-UUGGGa--CG- -5'
23844 5' -51.1 NC_005261.1 + 6185 0.71 0.875384
Target:  5'- cGCCUAGg-UGCgAGGGcgGGCCCaGCu -3'
miRNA:   3'- -CGGGUCaaACGgUUCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 135095 0.7 0.896941
Target:  5'- gGCCCGGcggcggaGCgCGAGGcgGACCCcGCg -3'
miRNA:   3'- -CGGGUCaaa----CG-GUUCCuaUUGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.