miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 1251 0.75 0.666461
Target:  5'- aGCCCgAGUccgUGcCCGGGGGUGACUgUGCc -3'
miRNA:   3'- -CGGG-UCAa--AC-GGUUCCUAUUGGgACG- -5'
23844 5' -51.1 NC_005261.1 + 6185 0.71 0.875384
Target:  5'- cGCCUAGg-UGCgAGGGcgGGCCCaGCu -3'
miRNA:   3'- -CGGGUCaaACGgUUCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 6230 0.66 0.9848
Target:  5'- gGUCCAGgugcGCCcGGGGaGGgCCUGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGuUCCUaUUgGGACG- -5'
23844 5' -51.1 NC_005261.1 + 10220 0.67 0.970278
Target:  5'- gGCCCGcGccUGCCcAGGcgGGCCC-GCg -3'
miRNA:   3'- -CGGGU-CaaACGGuUCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 12732 0.66 0.986567
Target:  5'- gGCCCGccg-GCCcccuGGGcgGGCCCgGCg -3'
miRNA:   3'- -CGGGUcaaaCGGu---UCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 15423 0.66 0.988172
Target:  5'- aGCCCAGagucgGCCGGGcGcgGGCCg-GCg -3'
miRNA:   3'- -CGGGUCaaa--CGGUUC-CuaUUGGgaCG- -5'
23844 5' -51.1 NC_005261.1 + 15924 0.67 0.980742
Target:  5'- -gCCGGg--GCCGGGGccggGGCCCggGCa -3'
miRNA:   3'- cgGGUCaaaCGGUUCCua--UUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 22676 0.76 0.645103
Target:  5'- cGCCCgAGUgccGCCGGGGGacgGGCCCgGCg -3'
miRNA:   3'- -CGGG-UCAaa-CGGUUCCUa--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 27274 0.69 0.943189
Target:  5'- aGCCCGGccgGCCcccGGAccGCCCUcGCg -3'
miRNA:   3'- -CGGGUCaaaCGGuu-CCUauUGGGA-CG- -5'
23844 5' -51.1 NC_005261.1 + 28523 0.75 0.666461
Target:  5'- gGCCCGGagggggGCCcgGAGGAggacccGGCCCUGCu -3'
miRNA:   3'- -CGGGUCaaa---CGG--UUCCUa-----UUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 28970 0.68 0.967125
Target:  5'- aGCCCGa---GCCGGGGAccgaUGACUCUGg -3'
miRNA:   3'- -CGGGUcaaaCGGUUCCU----AUUGGGACg -5'
23844 5' -51.1 NC_005261.1 + 29125 0.72 0.85169
Target:  5'- aGCCCuGgc-GCCGGGGGgcGCCCcGCc -3'
miRNA:   3'- -CGGGuCaaaCGGUUCCUauUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 29157 0.69 0.938319
Target:  5'- cGCCCGcGgauccaGCCAAGGccagGGCCCgGCg -3'
miRNA:   3'- -CGGGU-Caaa---CGGUUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 31002 0.67 0.973208
Target:  5'- cGgCCGGg--GCCAGGG---GCCCgGCg -3'
miRNA:   3'- -CgGGUCaaaCGGUUCCuauUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 32333 0.66 0.988172
Target:  5'- cGCCCGGcgugGCCuGGGAcgcgGACCaggGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGuUCCUa---UUGGga-CG- -5'
23844 5' -51.1 NC_005261.1 + 34158 0.67 0.980742
Target:  5'- cGCCuCGGacgagUGCUucGAGGAgauCCCUGUg -3'
miRNA:   3'- -CGG-GUCaa---ACGG--UUCCUauuGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 34454 0.66 0.986567
Target:  5'- cGCCgGGgcacggGCCGGGGGccccguaCCUGCg -3'
miRNA:   3'- -CGGgUCaaa---CGGUUCCUauug---GGACG- -5'
23844 5' -51.1 NC_005261.1 + 35700 0.69 0.927799
Target:  5'- cCCCGGUggGCCGGGGGcucgguggcGGCCCcgGCc -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUa--------UUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 35936 0.67 0.980742
Target:  5'- aGCCCAGcgggcGCCcAGGcccgAGCCCgGCc -3'
miRNA:   3'- -CGGGUCaaa--CGGuUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 36825 0.66 0.989486
Target:  5'- cCCCGGUaugcggUGCCGgcgcccgGGGGcUAGCCC-GCg -3'
miRNA:   3'- cGGGUCAa-----ACGGU-------UCCU-AUUGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.