miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 135095 0.7 0.896941
Target:  5'- gGCCCGGcggcggaGCgCGAGGcgGACCCcGCg -3'
miRNA:   3'- -CGGGUCaaa----CG-GUUCCuaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 134718 0.66 0.9848
Target:  5'- cGCCCAGacccgGCCG-GGAcccgGACUCgGCg -3'
miRNA:   3'- -CGGGUCaaa--CGGUuCCUa---UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 133290 0.69 0.938319
Target:  5'- cGCCCGccucGUggccGCCAAGGAcGACUggCUGCu -3'
miRNA:   3'- -CGGGU----CAaa--CGGUUCCUaUUGG--GACG- -5'
23844 5' -51.1 NC_005261.1 + 131657 0.68 0.963743
Target:  5'- cCCCGGgc-GCaccgucugCGAGGGUGcgaccGCCCUGCg -3'
miRNA:   3'- cGGGUCaaaCG--------GUUCCUAU-----UGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 125682 0.7 0.896941
Target:  5'- cGCCgaaugGGUUUGCCGGGcuUGGCCCgGCg -3'
miRNA:   3'- -CGGg----UCAAACGGUUCcuAUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 121177 0.71 0.867715
Target:  5'- cGCUCGGUgcacgggGCCGGGGccgGGCCCgggGCc -3'
miRNA:   3'- -CGGGUCAaa-----CGGUUCCua-UUGGGa--CG- -5'
23844 5' -51.1 NC_005261.1 + 117678 0.68 0.963743
Target:  5'- cGCCCGGccggGCCcgcggcGAGGccGGCCCUGa -3'
miRNA:   3'- -CGGGUCaaa-CGG------UUCCuaUUGGGACg -5'
23844 5' -51.1 NC_005261.1 + 109249 0.66 0.982861
Target:  5'- gGCCCAGUgcgggGCCAcgaaguccAGcGAgcugAGCCCggacGCg -3'
miRNA:   3'- -CGGGUCAaa---CGGU--------UC-CUa---UUGGGa---CG- -5'
23844 5' -51.1 NC_005261.1 + 103074 0.66 0.986567
Target:  5'- cGCCCAGcaccGCCGcgaAGGccgGGCCCaGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGU---UCCua-UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 93518 0.68 0.960125
Target:  5'- cGCCguGUUgGCCGcgAGGA-AGCCC-GCg -3'
miRNA:   3'- -CGGguCAAaCGGU--UCCUaUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 93464 0.67 0.970278
Target:  5'- cCCCAGcgcggUGCCGGGGcgcgcGUcGCCCgcgGCg -3'
miRNA:   3'- cGGGUCaa---ACGGUUCC-----UAuUGGGa--CG- -5'
23844 5' -51.1 NC_005261.1 + 91993 0.67 0.970278
Target:  5'- gGUCCAGcaggcgguggUGCagguGGAUGGCCUUGCc -3'
miRNA:   3'- -CGGGUCaa--------ACGguu-CCUAUUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 90630 0.67 0.973208
Target:  5'- -aCCGGcgugGCCAAcGGAcugcuGCCCUGCc -3'
miRNA:   3'- cgGGUCaaa-CGGUU-CCUau---UGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 89769 0.76 0.623699
Target:  5'- cGCCguG---GCCGAGGA-GGCCCUGCg -3'
miRNA:   3'- -CGGguCaaaCGGUUCCUaUUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 88602 0.69 0.947801
Target:  5'- gGCCCGGcggcGCCAcGGucGUGACgCUGCu -3'
miRNA:   3'- -CGGGUCaaa-CGGUuCC--UAUUGgGACG- -5'
23844 5' -51.1 NC_005261.1 + 85351 0.69 0.947801
Target:  5'- aGCCCAGcg-GCCcgcuGAGGAUGuucgcgccgccGCCCUcggGCu -3'
miRNA:   3'- -CGGGUCaaaCGG----UUCCUAU-----------UGGGA---CG- -5'
23844 5' -51.1 NC_005261.1 + 83032 0.69 0.943189
Target:  5'- cCCCGGgaggGCCGcucgccgcgggaGGGGgcuCCCUGCg -3'
miRNA:   3'- cGGGUCaaa-CGGU------------UCCUauuGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 74415 0.66 0.982861
Target:  5'- gGCCgCGGgcgggaggGCCGAGGAgagcGCCCccccgGCg -3'
miRNA:   3'- -CGG-GUCaaa-----CGGUUCCUau--UGGGa----CG- -5'
23844 5' -51.1 NC_005261.1 + 72158 0.68 0.963743
Target:  5'- cGUCCGGggUGUCcGGGAU--CCCgGCg -3'
miRNA:   3'- -CGGGUCaaACGGuUCCUAuuGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 72009 0.66 0.9848
Target:  5'- gGCCUuaac-GCCGGGGGcGACgCUGCg -3'
miRNA:   3'- -CGGGucaaaCGGUUCCUaUUGgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.