miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 36890 0.69 0.947801
Target:  5'- cGCCCuuccucGCCAAGGcgcGACCCcGCg -3'
miRNA:   3'- -CGGGucaaa-CGGUUCCua-UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 39368 0.69 0.947801
Target:  5'- cGCCUcaucGGcg-GCCGGGGAgggcGGCCCUGg -3'
miRNA:   3'- -CGGG----UCaaaCGGUUCCUa---UUGGGACg -5'
23844 5' -51.1 NC_005261.1 + 43404 0.67 0.970278
Target:  5'- cGUCCAGgc-GCCGGGGGcGGCCUccGCc -3'
miRNA:   3'- -CGGGUCaaaCGGUUCCUaUUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 44617 0.66 0.9848
Target:  5'- cGCaCCAGgaggcgUGCaggucgGAGGAggAGCUCUGCg -3'
miRNA:   3'- -CG-GGUCaa----ACGg-----UUCCUa-UUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 44925 0.73 0.799596
Target:  5'- gGCCCAGcc-GCCGAGGAgaguucggcgcuggaGAgCCUGCu -3'
miRNA:   3'- -CGGGUCaaaCGGUUCCUa--------------UUgGGACG- -5'
23844 5' -51.1 NC_005261.1 + 47244 0.69 0.927799
Target:  5'- cCCCAGaaaGCCGAGGA----CCUGCg -3'
miRNA:   3'- cGGGUCaaaCGGUUCCUauugGGACG- -5'
23844 5' -51.1 NC_005261.1 + 48898 0.66 0.982861
Target:  5'- aGCCgCAGUUgGCCucuAGcGcgAGCCCggGCg -3'
miRNA:   3'- -CGG-GUCAAaCGGu--UC-CuaUUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 56385 0.66 0.988771
Target:  5'- uCCCAGgagcucgcggggGCCcuGGGc-GCCCUGCg -3'
miRNA:   3'- cGGGUCaaa---------CGGuuCCUauUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 63132 0.67 0.980742
Target:  5'- cCCCGGU--GCCGGGGGgcuGCUugaaCUGCa -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUau-UGG----GACG- -5'
23844 5' -51.1 NC_005261.1 + 65337 0.66 0.986567
Target:  5'- gGCaCCGGgaugUUGCCGuugaugacgcgGGGcAUGGCCC-GCa -3'
miRNA:   3'- -CG-GGUCa---AACGGU-----------UCC-UAUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 69234 0.66 0.989624
Target:  5'- cGCUggggCGGUUcGCCGAGGcgcUGGCCC-GCg -3'
miRNA:   3'- -CGG----GUCAAaCGGUUCCu--AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 72009 0.66 0.9848
Target:  5'- gGCCUuaac-GCCGGGGGcGACgCUGCg -3'
miRNA:   3'- -CGGGucaaaCGGUUCCUaUUGgGACG- -5'
23844 5' -51.1 NC_005261.1 + 72158 0.68 0.963743
Target:  5'- cGUCCGGggUGUCcGGGAU--CCCgGCg -3'
miRNA:   3'- -CGGGUCaaACGGuUCCUAuuGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 74415 0.66 0.982861
Target:  5'- gGCCgCGGgcgggaggGCCGAGGAgagcGCCCccccgGCg -3'
miRNA:   3'- -CGG-GUCaaa-----CGGUUCCUau--UGGGa----CG- -5'
23844 5' -51.1 NC_005261.1 + 83032 0.69 0.943189
Target:  5'- cCCCGGgaggGCCGcucgccgcgggaGGGGgcuCCCUGCg -3'
miRNA:   3'- cGGGUCaaa-CGGU------------UCCUauuGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 85351 0.69 0.947801
Target:  5'- aGCCCAGcg-GCCcgcuGAGGAUGuucgcgccgccGCCCUcggGCu -3'
miRNA:   3'- -CGGGUCaaaCGG----UUCCUAU-----------UGGGA---CG- -5'
23844 5' -51.1 NC_005261.1 + 88602 0.69 0.947801
Target:  5'- gGCCCGGcggcGCCAcGGucGUGACgCUGCu -3'
miRNA:   3'- -CGGGUCaaa-CGGUuCC--UAUUGgGACG- -5'
23844 5' -51.1 NC_005261.1 + 89769 0.76 0.623699
Target:  5'- cGCCguG---GCCGAGGA-GGCCCUGCg -3'
miRNA:   3'- -CGGguCaaaCGGUUCCUaUUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 90630 0.67 0.973208
Target:  5'- -aCCGGcgugGCCAAcGGAcugcuGCCCUGCc -3'
miRNA:   3'- cgGGUCaaa-CGGUU-CCUau---UGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 91993 0.67 0.970278
Target:  5'- gGUCCAGcaggcgguggUGCagguGGAUGGCCUUGCc -3'
miRNA:   3'- -CGGGUCaa--------ACGguu-CCUAUUGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.