Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 5' | -51.1 | NC_005261.1 | + | 93518 | 0.68 | 0.960125 |
Target: 5'- cGCCguGUUgGCCGcgAGGA-AGCCC-GCg -3' miRNA: 3'- -CGGguCAAaCGGU--UCCUaUUGGGaCG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 72158 | 0.68 | 0.963743 |
Target: 5'- cGUCCGGggUGUCcGGGAU--CCCgGCg -3' miRNA: 3'- -CGGGUCaaACGGuUCCUAuuGGGaCG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 117678 | 0.68 | 0.963743 |
Target: 5'- cGCCCGGccggGCCcgcggcGAGGccGGCCCUGa -3' miRNA: 3'- -CGGGUCaaa-CGG------UUCCuaUUGGGACg -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 131657 | 0.68 | 0.963743 |
Target: 5'- cCCCGGgc-GCaccgucugCGAGGGUGcgaccGCCCUGCg -3' miRNA: 3'- cGGGUCaaaCG--------GUUCCUAU-----UGGGACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 28970 | 0.68 | 0.967125 |
Target: 5'- aGCCCGa---GCCGGGGAccgaUGACUCUGg -3' miRNA: 3'- -CGGGUcaaaCGGUUCCU----AUUGGGACg -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 93464 | 0.67 | 0.970278 |
Target: 5'- cCCCAGcgcggUGCCGGGGcgcgcGUcGCCCgcgGCg -3' miRNA: 3'- cGGGUCaa---ACGGUUCC-----UAuUGGGa--CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 91993 | 0.67 | 0.970278 |
Target: 5'- gGUCCAGcaggcgguggUGCagguGGAUGGCCUUGCc -3' miRNA: 3'- -CGGGUCaa--------ACGguu-CCUAUUGGGACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 43404 | 0.67 | 0.970278 |
Target: 5'- cGUCCAGgc-GCCGGGGGcGGCCUccGCc -3' miRNA: 3'- -CGGGUCaaaCGGUUCCUaUUGGGa-CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 10220 | 0.67 | 0.970278 |
Target: 5'- gGCCCGcGccUGCCcAGGcgGGCCC-GCg -3' miRNA: 3'- -CGGGU-CaaACGGuUCCuaUUGGGaCG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 31002 | 0.67 | 0.973208 |
Target: 5'- cGgCCGGg--GCCAGGG---GCCCgGCg -3' miRNA: 3'- -CgGGUCaaaCGGUUCCuauUGGGaCG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 90630 | 0.67 | 0.973208 |
Target: 5'- -aCCGGcgugGCCAAcGGAcugcuGCCCUGCc -3' miRNA: 3'- cgGGUCaaa-CGGUU-CCUau---UGGGACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 63132 | 0.67 | 0.980742 |
Target: 5'- cCCCGGU--GCCGGGGGgcuGCUugaaCUGCa -3' miRNA: 3'- cGGGUCAaaCGGUUCCUau-UGG----GACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 15924 | 0.67 | 0.980742 |
Target: 5'- -gCCGGg--GCCGGGGccggGGCCCggGCa -3' miRNA: 3'- cgGGUCaaaCGGUUCCua--UUGGGa-CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 35936 | 0.67 | 0.980742 |
Target: 5'- aGCCCAGcgggcGCCcAGGcccgAGCCCgGCc -3' miRNA: 3'- -CGGGUCaaa--CGGuUCCua--UUGGGaCG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 34158 | 0.67 | 0.980742 |
Target: 5'- cGCCuCGGacgagUGCUucGAGGAgauCCCUGUg -3' miRNA: 3'- -CGG-GUCaa---ACGG--UUCCUauuGGGACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 48898 | 0.66 | 0.982861 |
Target: 5'- aGCCgCAGUUgGCCucuAGcGcgAGCCCggGCg -3' miRNA: 3'- -CGG-GUCAAaCGGu--UC-CuaUUGGGa-CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 74415 | 0.66 | 0.982861 |
Target: 5'- gGCCgCGGgcgggaggGCCGAGGAgagcGCCCccccgGCg -3' miRNA: 3'- -CGG-GUCaaa-----CGGUUCCUau--UGGGa----CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 109249 | 0.66 | 0.982861 |
Target: 5'- gGCCCAGUgcgggGCCAcgaaguccAGcGAgcugAGCCCggacGCg -3' miRNA: 3'- -CGGGUCAaa---CGGU--------UC-CUa---UUGGGa---CG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 44617 | 0.66 | 0.9848 |
Target: 5'- cGCaCCAGgaggcgUGCaggucgGAGGAggAGCUCUGCg -3' miRNA: 3'- -CG-GGUCaa----ACGg-----UUCCUa-UUGGGACG- -5' |
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23844 | 5' | -51.1 | NC_005261.1 | + | 72009 | 0.66 | 0.9848 |
Target: 5'- gGCCUuaac-GCCGGGGGcGACgCUGCg -3' miRNA: 3'- -CGGGucaaaCGGUUCCUaUUGgGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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