Results 41 - 60 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23846 | 3' | -63.5 | NC_005261.1 | + | 1920 | 0.66 | 0.536775 |
Target: 5'- aGCGCGcgGCGCacugCGCCGCggGCaGCa- -3' miRNA: 3'- -CGCGCuaCGCG----GCGGCGgaCGaCGgc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 71981 | 0.66 | 0.536775 |
Target: 5'- cGCGCGGcaggUGCGCagCGUCGCCccugGCcuuaacGCCGg -3' miRNA: 3'- -CGCGCU----ACGCG--GCGGCGGa---CGa-----CGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 20749 | 0.66 | 0.536775 |
Target: 5'- cGUGUGGguguuugGCGCCGCCGaCUUGUacgcGCCc -3' miRNA: 3'- -CGCGCUa------CGCGGCGGC-GGACGa---CGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 15788 | 0.66 | 0.536775 |
Target: 5'- -gGCGG-GCGCCGCCcgcgcgGCCaGC-GCCGc -3' miRNA: 3'- cgCGCUaCGCGGCGG------CGGaCGaCGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 109222 | 0.66 | 0.536775 |
Target: 5'- gGCGCGGcaCGCCGCgCGCUgcaGCgcgGCCc -3' miRNA: 3'- -CGCGCUacGCGGCG-GCGGa--CGa--CGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 59387 | 0.66 | 0.536775 |
Target: 5'- cGCGCcacgGCGCCGa-GCCcggGCUcGCCGg -3' miRNA: 3'- -CGCGcua-CGCGGCggCGGa--CGA-CGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 63549 | 0.66 | 0.536775 |
Target: 5'- cGCGCGccGUGC-CCGCUGgC-GCgGCCGg -3' miRNA: 3'- -CGCGC--UACGcGGCGGCgGaCGaCGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 132642 | 0.66 | 0.536775 |
Target: 5'- aCGCGG-GCGCgGCgGCCcuaGCgGCCGc -3' miRNA: 3'- cGCGCUaCGCGgCGgCGGa--CGaCGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 11106 | 0.66 | 0.536775 |
Target: 5'- cGCGacgggacgaGAUGCGCCggcagcgugcGCCGCCU-CcGCCGc -3' miRNA: 3'- -CGCg--------CUACGCGG----------CGGCGGAcGaCGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 117347 | 0.66 | 0.536775 |
Target: 5'- cGCGCccaagGCGCCGcCCGCaagGCcGCCc -3' miRNA: 3'- -CGCGcua--CGCGGC-GGCGga-CGaCGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 121632 | 0.66 | 0.536775 |
Target: 5'- cCGCucgGCgGCCGCCGCCggcgagcgcggGCUGuCCGc -3' miRNA: 3'- cGCGcuaCG-CGGCGGCGGa----------CGAC-GGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 20854 | 0.66 | 0.535824 |
Target: 5'- aGCGUGGcggcucuUGCGCCGCgggccggccauCGCCaGCUcgugGCCGc -3' miRNA: 3'- -CGCGCU-------ACGCGGCG-----------GCGGaCGA----CGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 7667 | 0.66 | 0.535824 |
Target: 5'- -aGCGGccGCgGCCGCCGCCUGUguucuucuucuucUGCa- -3' miRNA: 3'- cgCGCUa-CG-CGGCGGCGGACG-------------ACGgc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 54771 | 0.66 | 0.53108 |
Target: 5'- aGUGCGGcggGCGacaggacggcgcgccCCGCCGCCUccGCguagGCCa -3' miRNA: 3'- -CGCGCUa--CGC---------------GGCGGCGGA--CGa---CGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 41136 | 0.66 | 0.527295 |
Target: 5'- uGCGUGGcgcGCGCCaGCCGCCgguagGCUucguccacgcgGCCc -3' miRNA: 3'- -CGCGCUa--CGCGG-CGGCGGa----CGA-----------CGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 4296 | 0.66 | 0.527295 |
Target: 5'- cCGCGGgccccGCgGCCGCCGCgUaGCgcgcgGCCGc -3' miRNA: 3'- cGCGCUa----CG-CGGCGGCGgA-CGa----CGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 77301 | 0.66 | 0.527295 |
Target: 5'- uCGCGAgcggacGCGCaCGCCaGCCggaGCUuccGCCGg -3' miRNA: 3'- cGCGCUa-----CGCG-GCGG-CGGa--CGA---CGGC- -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 64126 | 0.66 | 0.527295 |
Target: 5'- aCGUGccGCGCgGCCGCCaGCgcguccugGCCc -3' miRNA: 3'- cGCGCuaCGCGgCGGCGGaCGa-------CGGc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 3673 | 0.66 | 0.527295 |
Target: 5'- cCGCGGccgGCagGCCGCgGCCcGCUGCa- -3' miRNA: 3'- cGCGCUa--CG--CGGCGgCGGaCGACGgc -5' |
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23846 | 3' | -63.5 | NC_005261.1 | + | 38509 | 0.66 | 0.527295 |
Target: 5'- aGCGuCGuauaagGCGCgCGCUGgCUGCgcgcGCCGg -3' miRNA: 3'- -CGC-GCua----CGCG-GCGGCgGACGa---CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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