miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 104939 0.66 0.555904
Target:  5'- cGCGCGc-GCGCCaagcuCCGCC-GCgcagGCCGc -3'
miRNA:   3'- -CGCGCuaCGCGGc----GGCGGaCGa---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 68507 0.66 0.555904
Target:  5'- cGCGCuGAUGCagGCgUGCCuGCCgGCgccGCCGg -3'
miRNA:   3'- -CGCG-CUACG--CG-GCGG-CGGaCGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 68137 0.66 0.555904
Target:  5'- gGCGCGGcgaccGCGCCGUgGCCgGCUacacgcGCgCGg -3'
miRNA:   3'- -CGCGCUa----CGCGGCGgCGGaCGA------CG-GC- -5'
23846 3' -63.5 NC_005261.1 + 74690 0.66 0.555904
Target:  5'- cGCGCGGgaGCugGCCGCCGCgCggGCgcggaaccggGCCGc -3'
miRNA:   3'- -CGCGCUa-CG--CGGCGGCG-Ga-CGa---------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 68728 0.66 0.553021
Target:  5'- aCGCGGcggGCGCCGgcgggaagaagcgcCCGCCgggGC-GCCGc -3'
miRNA:   3'- cGCGCUa--CGCGGC--------------GGCGGa--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 74948 0.66 0.553021
Target:  5'- gGCGCGGgcgcGCucggcgcgcucgagGCCGCgCGCCcGC-GCCGg -3'
miRNA:   3'- -CGCGCUa---CG--------------CGGCG-GCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 100563 0.66 0.546313
Target:  5'- cGCGCagcGUGCacaCCGCCGCCUcGUcGCCc -3'
miRNA:   3'- -CGCGc--UACGc--GGCGGCGGA-CGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 90465 0.66 0.546313
Target:  5'- cGCGCGcacGUGCGCgagaGCCuGCUcagcgUGCUGCUc -3'
miRNA:   3'- -CGCGC---UACGCGg---CGG-CGG-----ACGACGGc -5'
23846 3' -63.5 NC_005261.1 + 44229 0.66 0.546313
Target:  5'- cGCGCGcUGC-UgGCCGCCcagcGCgcgGCCGa -3'
miRNA:   3'- -CGCGCuACGcGgCGGCGGa---CGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 65160 0.66 0.546313
Target:  5'- aGCGCGcagaagGUGCGCuCGCUGCCgugGaUGaCCGc -3'
miRNA:   3'- -CGCGC------UACGCG-GCGGCGGa--CgAC-GGC- -5'
23846 3' -63.5 NC_005261.1 + 35011 0.66 0.546313
Target:  5'- cUGCGGUGCgGCCGgCGUCUcggucGCUGgCGc -3'
miRNA:   3'- cGCGCUACG-CGGCgGCGGA-----CGACgGC- -5'
23846 3' -63.5 NC_005261.1 + 68281 0.66 0.546313
Target:  5'- cGCGCGGcgGgGCCccgGCCGCgggcgcggaccuCUGCgGCCGc -3'
miRNA:   3'- -CGCGCUa-CgCGG---CGGCG------------GACGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 134292 0.66 0.546313
Target:  5'- gGCGUGGguccaCGUCGCCGCCUuC-GCCGc -3'
miRNA:   3'- -CGCGCUac---GCGGCGGCGGAcGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 33079 0.66 0.546313
Target:  5'- gGCGCug-GCgGCCGCCGCCacauccccUGC-GUCGg -3'
miRNA:   3'- -CGCGcuaCG-CGGCGGCGG--------ACGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 117476 0.66 0.546313
Target:  5'- gGCgGCGAcGCGCUGCUGCgcuucuaccUUGCgcccGCCGg -3'
miRNA:   3'- -CG-CGCUaCGCGGCGGCG---------GACGa---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 99024 0.66 0.546313
Target:  5'- gGCGCGGcgGCGCgCGCCcacagcacccgcGCgaGCUGCa- -3'
miRNA:   3'- -CGCGCUa-CGCG-GCGG------------CGgaCGACGgc -5'
23846 3' -63.5 NC_005261.1 + 125721 0.66 0.543445
Target:  5'- cCGCGGgcucggcugGgGCCGCCgcaagggggccgggGCCaggGCUGCCGc -3'
miRNA:   3'- cGCGCUa--------CgCGGCGG--------------CGGa--CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 71981 0.66 0.536775
Target:  5'- cGCGCGGcaggUGCGCagCGUCGCCccugGCcuuaacGCCGg -3'
miRNA:   3'- -CGCGCU----ACGCG--GCGGCGGa---CGa-----CGGC- -5'
23846 3' -63.5 NC_005261.1 + 132642 0.66 0.536775
Target:  5'- aCGCGG-GCGCgGCgGCCcuaGCgGCCGc -3'
miRNA:   3'- cGCGCUaCGCGgCGgCGGa--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 117347 0.66 0.536775
Target:  5'- cGCGCccaagGCGCCGcCCGCaagGCcGCCc -3'
miRNA:   3'- -CGCGcua--CGCGGC-GGCGga-CGaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.