miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 38509 0.66 0.527295
Target:  5'- aGCGuCGuauaagGCGCgCGCUGgCUGCgcgcGCCGg -3'
miRNA:   3'- -CGC-GCua----CGCG-GCGGCgGACGa---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 93769 0.66 0.517879
Target:  5'- cGCGCGcgGCGUCGCaGCa-GgUGCCc -3'
miRNA:   3'- -CGCGCuaCGCGGCGgCGgaCgACGGc -5'
23846 3' -63.5 NC_005261.1 + 102423 0.66 0.527295
Target:  5'- uGC-CGcUGCGCgGCCGCCUccucgGCgcGCCGc -3'
miRNA:   3'- -CGcGCuACGCGgCGGCGGA-----CGa-CGGC- -5'
23846 3' -63.5 NC_005261.1 + 41136 0.66 0.527295
Target:  5'- uGCGUGGcgcGCGCCaGCCGCCgguagGCUucguccacgcgGCCc -3'
miRNA:   3'- -CGCGCUa--CGCGG-CGGCGGa----CGA-----------CGGc -5'
23846 3' -63.5 NC_005261.1 + 131768 0.66 0.527295
Target:  5'- gGCGCGgcGgGCgCGCCGCUggGCcccgacGCCGc -3'
miRNA:   3'- -CGCGCuaCgCG-GCGGCGGa-CGa-----CGGC- -5'
23846 3' -63.5 NC_005261.1 + 59082 0.66 0.527295
Target:  5'- cGCGCgGGUGCGCCGC-GCCcucgcGCUcGCa- -3'
miRNA:   3'- -CGCG-CUACGCGGCGgCGGa----CGA-CGgc -5'
23846 3' -63.5 NC_005261.1 + 102010 0.66 0.517879
Target:  5'- gGCGCagcuCGCCGCCGCCcgagGCCGc -3'
miRNA:   3'- -CGCGcuacGCGGCGGCGGacgaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 57279 0.66 0.527295
Target:  5'- uCGCGcgGCaGCUGCuCGCgaGCaGCCGc -3'
miRNA:   3'- cGCGCuaCG-CGGCG-GCGgaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 111538 0.66 0.517879
Target:  5'- cGgGCGAcGCGUUcaugcgGaCCGCCUGCccgGCCGa -3'
miRNA:   3'- -CgCGCUaCGCGG------C-GGCGGACGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 54771 0.66 0.53108
Target:  5'- aGUGCGGcggGCGacaggacggcgcgccCCGCCGCCUccGCguagGCCa -3'
miRNA:   3'- -CGCGCUa--CGC---------------GGCGGCGGA--CGa---CGGc -5'
23846 3' -63.5 NC_005261.1 + 88342 0.66 0.518818
Target:  5'- -gGCGgcGCcCCGCCGCCgcgGCguucacaucggaacgGCCGa -3'
miRNA:   3'- cgCGCuaCGcGGCGGCGGa--CGa--------------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 47674 0.66 0.517879
Target:  5'- aGCGcCGA-GCGCagcacgGCCGCCcGCggcGCCGc -3'
miRNA:   3'- -CGC-GCUaCGCGg-----CGGCGGaCGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 122292 0.66 0.517879
Target:  5'- -aGCGcgGCcCCGCUGCCgcagGCgacgcccggGCCGg -3'
miRNA:   3'- cgCGCuaCGcGGCGGCGGa---CGa--------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 77301 0.66 0.527295
Target:  5'- uCGCGAgcggacGCGCaCGCCaGCCggaGCUuccGCCGg -3'
miRNA:   3'- cGCGCUa-----CGCG-GCGG-CGGa--CGA---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 65661 0.66 0.517879
Target:  5'- cGCGCGccgGCGCgcagCGCCGCCaGCa-CCGg -3'
miRNA:   3'- -CGCGCua-CGCG----GCGGCGGaCGacGGC- -5'
23846 3' -63.5 NC_005261.1 + 88765 0.66 0.517879
Target:  5'- gGCgGCGcUGCGCUccucggcccugGCCGCCgGC-GCCGc -3'
miRNA:   3'- -CG-CGCuACGCGG-----------CGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 45421 0.66 0.527295
Target:  5'- gGCGCc-UGCGcCCGCCGCCcGCgcgcaagaugaGCCa -3'
miRNA:   3'- -CGCGcuACGC-GGCGGCGGaCGa----------CGGc -5'
23846 3' -63.5 NC_005261.1 + 70584 0.66 0.517879
Target:  5'- gGCGCGA-GCGCaGCgGCgUGC-GCCc -3'
miRNA:   3'- -CGCGCUaCGCGgCGgCGgACGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 127878 0.66 0.527295
Target:  5'- aGCGgGAgucGCGCCGgCGCCcGUcggGCCc -3'
miRNA:   3'- -CGCgCUa--CGCGGCgGCGGaCGa--CGGc -5'
23846 3' -63.5 NC_005261.1 + 95009 0.66 0.517879
Target:  5'- cUGCGggGCgggcuauaaaGCCGCCGCCggcgGCgcucggcGCCGc -3'
miRNA:   3'- cGCGCuaCG----------CGGCGGCGGa---CGa------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.