miRNA display CGI


Results 1 - 20 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 48509 0.65 0.573287
Target:  5'- uGCGCaGGUucuugacGCGCgCGCCGCCUGggaaaguCUGCg- -3'
miRNA:   3'- -CGCG-CUA-------CGCG-GCGGCGGAC-------GACGgc -5'
23846 3' -63.5 NC_005261.1 + 88765 0.66 0.517879
Target:  5'- gGCgGCGcUGCGCUccucggcccugGCCGCCgGC-GCCGc -3'
miRNA:   3'- -CG-CGCuACGCGG-----------CGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 108395 0.66 0.526351
Target:  5'- cGCGCGcuccaGCaGCCGCgccaccgCGCCUGCgUGCaCGg -3'
miRNA:   3'- -CGCGCua---CG-CGGCG-------GCGGACG-ACG-GC- -5'
23846 3' -63.5 NC_005261.1 + 2738 0.66 0.517879
Target:  5'- uGCGCu-UGCGCCGCgGCggGCcGUCGc -3'
miRNA:   3'- -CGCGcuACGCGGCGgCGgaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 95009 0.66 0.517879
Target:  5'- cUGCGggGCgggcuauaaaGCCGCCGCCggcgGCgcucggcGCCGc -3'
miRNA:   3'- cGCGCuaCG----------CGGCGGCGGa---CGa------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 59735 0.66 0.517879
Target:  5'- aGCgGCGgcGCGCgGCCGCCcuccaccagGCagGCCu -3'
miRNA:   3'- -CG-CGCuaCGCGgCGGCGGa--------CGa-CGGc -5'
23846 3' -63.5 NC_005261.1 + 65661 0.66 0.517879
Target:  5'- cGCGCGccgGCGCgcagCGCCGCCaGCa-CCGg -3'
miRNA:   3'- -CGCGCua-CGCG----GCGGCGGaCGacGGC- -5'
23846 3' -63.5 NC_005261.1 + 47674 0.66 0.517879
Target:  5'- aGCGcCGA-GCGCagcacgGCCGCCcGCggcGCCGc -3'
miRNA:   3'- -CGC-GCUaCGCGg-----CGGCGGaCGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 100052 0.66 0.517879
Target:  5'- aGCuCGAgcGCGCCGCCGCC-GC--CCGg -3'
miRNA:   3'- -CGcGCUa-CGCGGCGGCGGaCGacGGC- -5'
23846 3' -63.5 NC_005261.1 + 93769 0.66 0.517879
Target:  5'- cGCGCGcgGCGUCGCaGCa-GgUGCCc -3'
miRNA:   3'- -CGCGCuaCGCGGCGgCGgaCgACGGc -5'
23846 3' -63.5 NC_005261.1 + 94063 0.66 0.517879
Target:  5'- gGCGcCGGgagcagaacCGCCGCCGCCgggaacGCcGCCGu -3'
miRNA:   3'- -CGC-GCUac-------GCGGCGGCGGa-----CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 122292 0.66 0.517879
Target:  5'- -aGCGcgGCcCCGCUGCCgcagGCgacgcccggGCCGg -3'
miRNA:   3'- cgCGCuaCGcGGCGGCGGa---CGa--------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 50176 0.66 0.517879
Target:  5'- cCGCGG-GCaCCGCCGCa-GCaGCCGg -3'
miRNA:   3'- cGCGCUaCGcGGCGGCGgaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 111538 0.66 0.517879
Target:  5'- cGgGCGAcGCGUUcaugcgGaCCGCCUGCccgGCCGa -3'
miRNA:   3'- -CgCGCUaCGCGG------C-GGCGGACGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 27575 0.66 0.516004
Target:  5'- -gGCGAgcacCGUCGCCGCCgacuguaccuucGUUGCCGu -3'
miRNA:   3'- cgCGCUac--GCGGCGGCGGa-----------CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 102010 0.66 0.517879
Target:  5'- gGCGCagcuCGCCGCCGCCcgagGCCGc -3'
miRNA:   3'- -CGCGcuacGCGGCGGCGGacgaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 29536 0.66 0.524464
Target:  5'- aGCGCGAaGCucgcggGCCcggaccugcagcugGCgCGCCUGCUGCa- -3'
miRNA:   3'- -CGCGCUaCG------CGG--------------CG-GCGGACGACGgc -5'
23846 3' -63.5 NC_005261.1 + 46670 0.66 0.517879
Target:  5'- cGCGCGuUG-GCCGCgCGCUccacgGCgGCCGc -3'
miRNA:   3'- -CGCGCuACgCGGCG-GCGGa----CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 70584 0.66 0.517879
Target:  5'- gGCGCGA-GCGCaGCgGCgUGC-GCCc -3'
miRNA:   3'- -CGCGCUaCGCGgCGgCGgACGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 88342 0.66 0.518818
Target:  5'- -gGCGgcGCcCCGCCGCCgcgGCguucacaucggaacgGCCGa -3'
miRNA:   3'- cgCGCuaCGcGGCGGCGGa--CGa--------------CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.