miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 120 0.72 0.243642
Target:  5'- cGCGCcg-GCGCCGCC-CCUGgUGCUc -3'
miRNA:   3'- -CGCGcuaCGCGGCGGcGGACgACGGc -5'
23846 3' -63.5 NC_005261.1 + 204 0.75 0.158659
Target:  5'- -aGCGGUGcCGCCGCCGCCccUGgUGCUc -3'
miRNA:   3'- cgCGCUAC-GCGGCGGCGG--ACgACGGc -5'
23846 3' -63.5 NC_005261.1 + 1167 0.73 0.206796
Target:  5'- cGCGCGccggcccGCGCCGCgGCCgggGCcgggGCCGg -3'
miRNA:   3'- -CGCGCua-----CGCGGCGgCGGa--CGa---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 1222 0.68 0.411221
Target:  5'- cGC-CGAUGcCGCCGUCGCCgGCc-CCGg -3'
miRNA:   3'- -CGcGCUAC-GCGGCGGCGGaCGacGGC- -5'
23846 3' -63.5 NC_005261.1 + 1523 0.67 0.471894
Target:  5'- gGCGCcagcuccaGCGCgCGCCGCCcGCagGCCa -3'
miRNA:   3'- -CGCGcua-----CGCG-GCGGCGGaCGa-CGGc -5'
23846 3' -63.5 NC_005261.1 + 1600 0.67 0.490053
Target:  5'- gGCGCGGUG-GCUgGCCGCCUcGCccuCCGc -3'
miRNA:   3'- -CGCGCUACgCGG-CGGCGGA-CGac-GGC- -5'
23846 3' -63.5 NC_005261.1 + 1664 0.69 0.394792
Target:  5'- uGCGCGGccauguccuUGCGCCcgucgaGCCGCggcagcacgcGCUGCCGg -3'
miRNA:   3'- -CGCGCU---------ACGCGG------CGGCGga--------CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 1920 0.66 0.536775
Target:  5'- aGCGCGcgGCGCacugCGCCGCggGCaGCa- -3'
miRNA:   3'- -CGCGCuaCGCG----GCGGCGgaCGaCGgc -5'
23846 3' -63.5 NC_005261.1 + 2019 0.67 0.50853
Target:  5'- gGCGuCGAUcacGaucaGCCGCCGCC-GC-GCCGc -3'
miRNA:   3'- -CGC-GCUA---Cg---CGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 2177 0.66 0.527295
Target:  5'- cGUGCGAgucgGCGCUcaGCagcaGCCgGUUGCCc -3'
miRNA:   3'- -CGCGCUa---CGCGG--CGg---CGGaCGACGGc -5'
23846 3' -63.5 NC_005261.1 + 2593 0.68 0.454082
Target:  5'- aCGCGgcGgaaGCCGCCGUCggcgGCgggGCCGc -3'
miRNA:   3'- cGCGCuaCg--CGGCGGCGGa---CGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 2738 0.66 0.517879
Target:  5'- uGCGCu-UGCGCCGCgGCggGCcGUCGc -3'
miRNA:   3'- -CGCGcuACGCGGCGgCGgaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 2781 0.69 0.394792
Target:  5'- cGCcccCGAgGgGCUGCCGCCgGCgGCCGg -3'
miRNA:   3'- -CGc--GCUaCgCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 3376 0.74 0.179145
Target:  5'- cCGCGA-GCGCgGCCGCCaGCcgcGCCGg -3'
miRNA:   3'- cGCGCUaCGCGgCGGCGGaCGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 3452 0.69 0.393982
Target:  5'- cGCGCGGgccgccGCGCCGCgcgucgaguaccgCGCCaGCgggGCCa -3'
miRNA:   3'- -CGCGCUa-----CGCGGCG-------------GCGGaCGa--CGGc -5'
23846 3' -63.5 NC_005261.1 + 3504 0.68 0.402954
Target:  5'- cGCGCcgccaGCGCgGCCGCCUccagcGCggcgGCCGc -3'
miRNA:   3'- -CGCGcua--CGCGgCGGCGGA-----CGa---CGGC- -5'
23846 3' -63.5 NC_005261.1 + 3634 0.68 0.428067
Target:  5'- cGCGCuccgGGUGCGCCGCuagcgCGUCUGgaGCg- -3'
miRNA:   3'- -CGCG----CUACGCGGCG-----GCGGACgaCGgc -5'
23846 3' -63.5 NC_005261.1 + 3673 0.66 0.527295
Target:  5'- cCGCGGccgGCagGCCGCgGCCcGCUGCa- -3'
miRNA:   3'- cGCGCUa--CG--CGGCGgCGGaCGACGgc -5'
23846 3' -63.5 NC_005261.1 + 3717 0.68 0.454082
Target:  5'- aGCucaGAcGCGCCGCUGCCggacGC-GCCGg -3'
miRNA:   3'- -CGcg-CUaCGCGGCGGCGGa---CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 3749 0.68 0.436642
Target:  5'- gGCGCaccGCGCCGCCucuagcGCCUcGCggcagGCCGc -3'
miRNA:   3'- -CGCGcuaCGCGGCGG------CGGA-CGa----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.