miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 137887 0.75 0.158659
Target:  5'- -aGCGGUGcCGCCGCCGCCccUGgUGCUc -3'
miRNA:   3'- cgCGCUAC-GCGGCGGCGG--ACgACGGc -5'
23846 3' -63.5 NC_005261.1 + 137803 0.72 0.243642
Target:  5'- cGCGCcg-GCGCCGCC-CCUGgUGCUc -3'
miRNA:   3'- -CGCGcuaCGCGGCGGcGGACgACGGc -5'
23846 3' -63.5 NC_005261.1 + 136490 0.73 0.206796
Target:  5'- aGCaGCGAgcagcucgGCGCCGaCGCCUGCU-CCGg -3'
miRNA:   3'- -CG-CGCUa-------CGCGGCgGCGGACGAcGGC- -5'
23846 3' -63.5 NC_005261.1 + 135760 0.74 0.192536
Target:  5'- cGCGCGGUGCGCuccggcgcagagCGCgUGCC-GCUGUCGg -3'
miRNA:   3'- -CGCGCUACGCG------------GCG-GCGGaCGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 135631 0.67 0.50853
Target:  5'- gGCGCccuucAUGCGCUGCUaCCUGCgcggGCgCGg -3'
miRNA:   3'- -CGCGc----UACGCGGCGGcGGACGa---CG-GC- -5'
23846 3' -63.5 NC_005261.1 + 135302 0.67 0.471894
Target:  5'- cGCGCGAccgGCG-UGUCGCCcuggGCgGCCGu -3'
miRNA:   3'- -CGCGCUa--CGCgGCGGCGGa---CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 135234 0.68 0.428067
Target:  5'- aGCGCGu--CGCCGCCGUCU-UUGCgGg -3'
miRNA:   3'- -CGCGCuacGCGGCGGCGGAcGACGgC- -5'
23846 3' -63.5 NC_005261.1 + 134481 0.73 0.216803
Target:  5'- cGUGgGcgGCGUCGUCGCgCUGCUGCa- -3'
miRNA:   3'- -CGCgCuaCGCGGCGGCG-GACGACGgc -5'
23846 3' -63.5 NC_005261.1 + 134365 0.69 0.386739
Target:  5'- cGCGCGGgggGCGgCGCCGCUgGCgacgGCg- -3'
miRNA:   3'- -CGCGCUa--CGCgGCGGCGGaCGa---CGgc -5'
23846 3' -63.5 NC_005261.1 + 134292 0.66 0.546313
Target:  5'- gGCGUGGguccaCGUCGCCGCCUuC-GCCGc -3'
miRNA:   3'- -CGCGCUac---GCGGCGGCGGAcGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 133899 0.75 0.166587
Target:  5'- cCGCGgcGCGCUGCUgGCCUGgCUGCUGu -3'
miRNA:   3'- cGCGCuaCGCGGCGG-CGGAC-GACGGC- -5'
23846 3' -63.5 NC_005261.1 + 133827 0.73 0.221961
Target:  5'- gGCGC--UGCGCgGCCGCgUGCgcgccgugGCCGg -3'
miRNA:   3'- -CGCGcuACGCGgCGGCGgACGa-------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 133787 0.66 0.555904
Target:  5'- uCGUGcgGCGCaucCCGCCcggGCUGCuCGa -3'
miRNA:   3'- cGCGCuaCGCGgc-GGCGGa--CGACG-GC- -5'
23846 3' -63.5 NC_005261.1 + 133624 0.69 0.386739
Target:  5'- gGCGCuGUGgGCCGCgcuCGCCgcgccGCUGCgCGa -3'
miRNA:   3'- -CGCGcUACgCGGCG---GCGGa----CGACG-GC- -5'
23846 3' -63.5 NC_005261.1 + 133347 0.79 0.082718
Target:  5'- cGCGCGcgGCGCUGCCGCgCagggcuucgGCUGCCu -3'
miRNA:   3'- -CGCGCuaCGCGGCGGCG-Ga--------CGACGGc -5'
23846 3' -63.5 NC_005261.1 + 133268 0.74 0.197191
Target:  5'- cGCGCGAguaccaggGCGCCGgCGCCcGCcucgugGCCGc -3'
miRNA:   3'- -CGCGCUa-------CGCGGCgGCGGaCGa-----CGGC- -5'
23846 3' -63.5 NC_005261.1 + 133144 0.75 0.147405
Target:  5'- cUGCGGUGCGCgcuCGCCGCCgucgGCgucGCCGc -3'
miRNA:   3'- cGCGCUACGCG---GCGGCGGa---CGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 132953 0.67 0.490053
Target:  5'- aGCGC--UGCGCCgacgugGCCGCCUucGUcGCCGc -3'
miRNA:   3'- -CGCGcuACGCGG------CGGCGGA--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 132642 0.66 0.536775
Target:  5'- aCGCGG-GCGCgGCgGCCcuaGCgGCCGc -3'
miRNA:   3'- cGCGCUaCGCGgCGgCGGa--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 132364 0.67 0.480932
Target:  5'- cCGCGgcGCGCuCGCCGCgCUcGCggcGCUGu -3'
miRNA:   3'- cGCGCuaCGCG-GCGGCG-GA-CGa--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.