miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 48509 0.65 0.573287
Target:  5'- uGCGCaGGUucuugacGCGCgCGCCGCCUGggaaaguCUGCg- -3'
miRNA:   3'- -CGCG-CUA-------CGCG-GCGGCGGAC-------GACGgc -5'
23846 3' -63.5 NC_005261.1 + 64041 0.79 0.082718
Target:  5'- gGCGCGGcucUGCGCCGCguggugCGCCaccgGCUGCCGc -3'
miRNA:   3'- -CGCGCU---ACGCGGCG------GCGGa---CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 133347 0.79 0.082718
Target:  5'- cGCGCGcgGCGCUGCCGCgCagggcuucgGCUGCCu -3'
miRNA:   3'- -CGCGCuaCGCGGCGGCG-Ga--------CGACGGc -5'
23846 3' -63.5 NC_005261.1 + 118578 0.79 0.084856
Target:  5'- cGCGCGGcggcgcGCGCCGCCGCCgcggagcucgcGCUGUCGg -3'
miRNA:   3'- -CGCGCUa-----CGCGGCGGCGGa----------CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 67303 0.78 0.091593
Target:  5'- cGCGCGc-GCGCCGCCGUCgGCcGCCGc -3'
miRNA:   3'- -CGCGCuaCGCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 50039 0.78 0.093711
Target:  5'- cGCGCGAcggugcaGCGCCGCCgcgagaaGCCcGCUGCCGc -3'
miRNA:   3'- -CGCGCUa------CGCGGCGG-------CGGaCGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 121066 0.78 0.093949
Target:  5'- cGCGCGGUGUGCgCGgCGCCgGCgGCCGc -3'
miRNA:   3'- -CGCGCUACGCG-GCgGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 46952 0.78 0.093949
Target:  5'- cCGCGGgccaguccGCGCCGUCGCC-GCUGCCGc -3'
miRNA:   3'- cGCGCUa-------CGCGGCGGCGGaCGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 76605 0.78 0.101367
Target:  5'- cGCGCGcUGcCGcCCGCCGCCccGCUGCCc -3'
miRNA:   3'- -CGCGCuAC-GC-GGCGGCGGa-CGACGGc -5'
23846 3' -63.5 NC_005261.1 + 111627 0.8 0.076606
Target:  5'- gGCGCcGUGcCGCCGCCGCCcGCcGCCGc -3'
miRNA:   3'- -CGCGcUAC-GCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 81504 0.8 0.074667
Target:  5'- aGCGCGGcgcgcGCGCCGCCGCCgGC-GCCa -3'
miRNA:   3'- -CGCGCUa----CGCGGCGGCGGaCGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 95735 0.8 0.072775
Target:  5'- cGCGCucaGcgGCGCCGCCGCC-GCcGCCGg -3'
miRNA:   3'- -CGCG---CuaCGCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 55158 0.83 0.043349
Target:  5'- cGCGCGA-GCGCCGCCGCCggcgGCUcGCgGg -3'
miRNA:   3'- -CGCGCUaCGCGGCGGCGGa---CGA-CGgC- -5'
23846 3' -63.5 NC_005261.1 + 34421 0.83 0.043349
Target:  5'- cGCGCGGcccGCGCCuGCC-CCUGCUGCCGa -3'
miRNA:   3'- -CGCGCUa--CGCGG-CGGcGGACGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 100079 0.82 0.053382
Target:  5'- gGCGCGccGCGCCccucGCCGCCgccGCUGCCGc -3'
miRNA:   3'- -CGCGCuaCGCGG----CGGCGGa--CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 29865 0.82 0.053382
Target:  5'- cCGCGcgGCGCCGgCGCC-GCUGCCGc -3'
miRNA:   3'- cGCGCuaCGCGGCgGCGGaCGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 12209 0.81 0.060764
Target:  5'- cGC-CGGUGcCGCCGCCG-CUGCUGCCGc -3'
miRNA:   3'- -CGcGCUAC-GCGGCGGCgGACGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 98760 0.81 0.060764
Target:  5'- cGCGCGGUugccGCuGCCGCCGCCgGCcGCCGg -3'
miRNA:   3'- -CGCGCUA----CG-CGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 28882 0.8 0.065657
Target:  5'- gGCGCGGa-CGCCGCCGCCUGC-GCCc -3'
miRNA:   3'- -CGCGCUacGCGGCGGCGGACGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 29252 0.8 0.070565
Target:  5'- cGCGCGAcGgGCCGCCGCCgcuggagggcccGCUGCUGa -3'
miRNA:   3'- -CGCGCUaCgCGGCGGCGGa-----------CGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.