miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 3790 0.67 0.499254
Target:  5'- cGCaGCGGUccgccagcucGCGCaGCCGCUcgcgcGCUGCCGc -3'
miRNA:   3'- -CG-CGCUA----------CGCGgCGGCGGa----CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 3846 0.7 0.348128
Target:  5'- gGCGgcaGcgGCGCCGgCGCCgcGCgGCCGg -3'
miRNA:   3'- -CGCg--CuaCGCGGCgGCGGa-CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 3905 0.77 0.120871
Target:  5'- gGCGCGG-GCGCCcgcGCCGCCgGC-GCCGg -3'
miRNA:   3'- -CGCGCUaCGCGG---CGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 4296 0.66 0.527295
Target:  5'- cCGCGGgccccGCgGCCGCCGCgUaGCgcgcgGCCGc -3'
miRNA:   3'- cGCGCUa----CG-CGGCGGCGgA-CGa----CGGC- -5'
23846 3' -63.5 NC_005261.1 + 4378 0.68 0.454965
Target:  5'- cGCGCcgccGAaGCGCaCGCgGCCgggcggcggcggcgcGCUGCCGg -3'
miRNA:   3'- -CGCG----CUaCGCG-GCGgCGGa--------------CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 4478 0.75 0.158659
Target:  5'- uCGCGcgGCGCCGCggcguaGCCUGCgcggGCCc -3'
miRNA:   3'- cGCGCuaCGCGGCGg-----CGGACGa---CGGc -5'
23846 3' -63.5 NC_005261.1 + 4524 0.72 0.249331
Target:  5'- cGCGCGG-GCGCCGCgGCgaggGC-GCCGg -3'
miRNA:   3'- -CGCGCUaCGCGGCGgCGga--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 4935 0.7 0.348128
Target:  5'- cCGCGAgcgcccGCGCCGCgGCCcagGCgcccccgGCCGc -3'
miRNA:   3'- cGCGCUa-----CGCGGCGgCGGa--CGa------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 5124 0.66 0.564578
Target:  5'- gGCGCGGgcggcccgccgGCGCuCGCgCGCCUcggcccgGCggGCCGc -3'
miRNA:   3'- -CGCGCUa----------CGCG-GCG-GCGGA-------CGa-CGGC- -5'
23846 3' -63.5 NC_005261.1 + 6263 0.71 0.308247
Target:  5'- cCGCGggGCGgcCCGCCGCCaaacucauuguaauaUGCgcgGCCGu -3'
miRNA:   3'- cGCGCuaCGC--GGCGGCGG---------------ACGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 7597 0.69 0.393982
Target:  5'- cGCGCGccUGCuuacccgGCCGCUGgaucugccUCUGCUGCCGc -3'
miRNA:   3'- -CGCGCu-ACG-------CGGCGGC--------GGACGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 7667 0.66 0.535824
Target:  5'- -aGCGGccGCgGCCGCCGCCUGUguucuucuucuucUGCa- -3'
miRNA:   3'- cgCGCUa-CG-CGGCGGCGGACG-------------ACGgc -5'
23846 3' -63.5 NC_005261.1 + 10170 0.69 0.394792
Target:  5'- cUGCGAcgGCuCCuGCCGCCU-CUGCCGc -3'
miRNA:   3'- cGCGCUa-CGcGG-CGGCGGAcGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 10378 0.73 0.20533
Target:  5'- cGCGCGcUGCGCCGCgCGCucgucggcuucuuuCUGCUcgGCCa -3'
miRNA:   3'- -CGCGCuACGCGGCG-GCG--------------GACGA--CGGc -5'
23846 3' -63.5 NC_005261.1 + 10505 0.69 0.358656
Target:  5'- uGCGCGcgGcCGCCGCUGCgggccccgcggcgcgCUcGCUGUCGc -3'
miRNA:   3'- -CGCGCuaC-GCGGCGGCG---------------GA-CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 10906 0.72 0.249331
Target:  5'- gGCgGCGGcaGCGCCGCCGCCg---GCCGc -3'
miRNA:   3'- -CG-CGCUa-CGCGGCGGCGGacgaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 11106 0.66 0.536775
Target:  5'- cGCGacgggacgaGAUGCGCCggcagcgugcGCCGCCU-CcGCCGc -3'
miRNA:   3'- -CGCg--------CUACGCGG----------CGGCGGAcGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 12122 0.75 0.162579
Target:  5'- aGCGCcagGAUgGCGcCCGCCGCCgcgGCgGCCGc -3'
miRNA:   3'- -CGCG---CUA-CGC-GGCGGCGGa--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 12178 0.67 0.490053
Target:  5'- -gGCca-GCGCCGCCGCCaccaUGCagcGCCGc -3'
miRNA:   3'- cgCGcuaCGCGGCGGCGG----ACGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 12209 0.81 0.060764
Target:  5'- cGC-CGGUGcCGCCGCCG-CUGCUGCCGc -3'
miRNA:   3'- -CGcGCUAC-GCGGCGGCgGACGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.