miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 107809 0.78 0.103697
Target:  5'- cGCGCGcgGCggcccuagcggccGCCGCCGCCU-CUGCCc -3'
miRNA:   3'- -CGCGCuaCG-------------CGGCGGCGGAcGACGGc -5'
23846 3' -63.5 NC_005261.1 + 106235 0.78 0.103697
Target:  5'- gGCGCGGccGCcgcgcccuaccggGCCGCCGCCgccGCUGCCGc -3'
miRNA:   3'- -CGCGCUa-CG-------------CGGCGGCGGa--CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 102933 0.78 0.103959
Target:  5'- cGCGCa--GCGCCGCCGCC-GCUGCgGc -3'
miRNA:   3'- -CGCGcuaCGCGGCGGCGGaCGACGgC- -5'
23846 3' -63.5 NC_005261.1 + 29975 0.77 0.106615
Target:  5'- gGCGCGGUGCGCCGCCGgC-GC-GuCCGg -3'
miRNA:   3'- -CGCGCUACGCGGCGGCgGaCGaC-GGC- -5'
23846 3' -63.5 NC_005261.1 + 3905 0.77 0.120871
Target:  5'- gGCGCGG-GCGCCcgcGCCGCCgGC-GCCGg -3'
miRNA:   3'- -CGCGCUaCGCGG---CGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 46998 0.77 0.120871
Target:  5'- cGCGCGccGCGCCGCCGCgaUGCgGCgGu -3'
miRNA:   3'- -CGCGCuaCGCGGCGGCGg-ACGaCGgC- -5'
23846 3' -63.5 NC_005261.1 + 104260 0.77 0.123928
Target:  5'- cGCGCGA-GCGCCGCgGUCUcggcgGCUGCgCGg -3'
miRNA:   3'- -CGCGCUaCGCGGCGgCGGA-----CGACG-GC- -5'
23846 3' -63.5 NC_005261.1 + 116652 0.76 0.12674
Target:  5'- cGCGCGcc-CGCCGCCGaCCUGCUccgcggcGCCGg -3'
miRNA:   3'- -CGCGCuacGCGGCGGC-GGACGA-------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 28584 0.76 0.127056
Target:  5'- cGCGCGA-GCGCCggcggGCCGCCcGC-GCCGa -3'
miRNA:   3'- -CGCGCUaCGCGG-----CGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 46562 0.76 0.130257
Target:  5'- aGCGCGA-GCGCUGCUGCgaGCgcgGCCu -3'
miRNA:   3'- -CGCGCUaCGCGGCGGCGgaCGa--CGGc -5'
23846 3' -63.5 NC_005261.1 + 89419 0.76 0.130257
Target:  5'- gGCGCG-UGCGCgGCCGCCggGCUccccgcgcccGCCGu -3'
miRNA:   3'- -CGCGCuACGCGgCGGCGGa-CGA----------CGGC- -5'
23846 3' -63.5 NC_005261.1 + 44861 0.76 0.133532
Target:  5'- cCGCGAggaagaGCGCCGCCGCgaGC-GCCGc -3'
miRNA:   3'- cGCGCUa-----CGCGGCGGCGgaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 31906 0.76 0.136207
Target:  5'- cGCGCGGcucuaccccgggGCGCCGCCGCUggGCucUGCCGc -3'
miRNA:   3'- -CGCGCUa-----------CGCGGCGGCGGa-CG--ACGGC- -5'
23846 3' -63.5 NC_005261.1 + 29629 0.76 0.136883
Target:  5'- aGCGUGAcgGCGCCGCUGCC-GCcgGUCGg -3'
miRNA:   3'- -CGCGCUa-CGCGGCGGCGGaCGa-CGGC- -5'
23846 3' -63.5 NC_005261.1 + 94613 0.76 0.136883
Target:  5'- cGCGCGcccuCGCCGCCGCCgGC-GCCGu -3'
miRNA:   3'- -CGCGCuac-GCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 83097 0.76 0.140312
Target:  5'- aGCGCcuccaGCGCCGCCGCC-GCcGCCGc -3'
miRNA:   3'- -CGCGcua--CGCGGCGGCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 126478 0.76 0.140312
Target:  5'- uCGCGGUaguaccGCGCCGCCaCCaGCUGCCGc -3'
miRNA:   3'- cGCGCUA------CGCGGCGGcGGaCGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 131558 0.76 0.140312
Target:  5'- -gGCGGU-CGCCGUCGCCcgGCUGCCc -3'
miRNA:   3'- cgCGCUAcGCGGCGGCGGa-CGACGGc -5'
23846 3' -63.5 NC_005261.1 + 120235 0.76 0.140312
Target:  5'- aCGUGGaGCGCCGCuuCGCCgcgGCUGCCa -3'
miRNA:   3'- cGCGCUaCGCGGCG--GCGGa--CGACGGc -5'
23846 3' -63.5 NC_005261.1 + 103381 0.76 0.143818
Target:  5'- cGCGCGccgccGCGCCgcgGCCGCCUGC-GCCu -3'
miRNA:   3'- -CGCGCua---CGCGG---CGGCGGACGaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.