miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 39978 0.66 0.962462
Target:  5'- gCGgGUUgcgcgcGCCGCcGGCGUGCGUg -3'
miRNA:   3'- -GCgUAGauauu-CGGCGcCUGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 126700 0.66 0.962462
Target:  5'- gGCGgugCgggAAGCgGCuGGuucGCGUGCGCg -3'
miRNA:   3'- gCGUa--GauaUUCGgCG-CC---UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 68576 0.66 0.961047
Target:  5'- gCGCGUCgccgccgaggcGGGCCGCGGgaGCGgggccgacgGCGUg -3'
miRNA:   3'- -GCGUAGaua--------UUCGGCGCC--UGCa--------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 135790 0.66 0.958855
Target:  5'- cCGCuGUCggagGUGA-CCGUGGGCGacGCGCc -3'
miRNA:   3'- -GCG-UAGa---UAUUcGGCGCCUGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 110521 0.66 0.958855
Target:  5'- cCGuCGUCUGcGGGgCGCaggaGGGCGcGCGCa -3'
miRNA:   3'- -GC-GUAGAUaUUCgGCG----CCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31553 0.66 0.958855
Target:  5'- uCGCA-CgccUGGGCCGgguccUGGACGgGCGCg -3'
miRNA:   3'- -GCGUaGau-AUUCGGC-----GCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 101419 0.66 0.958855
Target:  5'- uGCGUCacgacGUcGGCCGcCGaGGCG-GCGCg -3'
miRNA:   3'- gCGUAGa----UAuUCGGC-GC-CUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 111612 0.66 0.958855
Target:  5'- gCGCggCUG--GGCUGCGGcgcCGUGcCGCc -3'
miRNA:   3'- -GCGuaGAUauUCGGCGCCu--GCAC-GCG- -5'
23846 5' -53.6 NC_005261.1 + 54477 0.66 0.958855
Target:  5'- gGCAUCc---GGgCGuCGGGCGgcagGCGCa -3'
miRNA:   3'- gCGUAGauauUCgGC-GCCUGCa---CGCG- -5'
23846 5' -53.6 NC_005261.1 + 32028 0.66 0.958855
Target:  5'- gCGCGUgCU----GCCGCGGcucgACGgGCGCa -3'
miRNA:   3'- -GCGUA-GAuauuCGGCGCC----UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 18961 0.66 0.958855
Target:  5'- cCGCAgCUc--AGUgGCGGugGgGCGCg -3'
miRNA:   3'- -GCGUaGAuauUCGgCGCCugCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 81432 0.66 0.958855
Target:  5'- gGCGUCguc-GGCCGCcccgcGGCGgGCGCc -3'
miRNA:   3'- gCGUAGauauUCGGCGc----CUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 46798 0.66 0.958855
Target:  5'- gCGCccGUCgcggcGCgCGCGGAUG-GCGCg -3'
miRNA:   3'- -GCG--UAGauauuCG-GCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 105255 0.66 0.958855
Target:  5'- gGCAUCcgcgcgacAGGCUcgGCGGGCGgcaGCGCc -3'
miRNA:   3'- gCGUAGaua-----UUCGG--CGCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 33041 0.66 0.956581
Target:  5'- aGCGUCcgcgGAgggccaggacucggcGCCGgGGACGcgGCGCu -3'
miRNA:   3'- gCGUAGaua-UU---------------CGGCgCCUGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 117919 0.66 0.956194
Target:  5'- gCGCGggaacgaaggccGGCUGCGGccCGUGCGCg -3'
miRNA:   3'- -GCGUagauau------UCGGCGCCu-GCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 116463 0.66 0.955018
Target:  5'- aGUGUgUGUGuuuuGCCggcGCGGGCGgggcggGCGCg -3'
miRNA:   3'- gCGUAgAUAUu---CGG---CGCCUGCa-----CGCG- -5'
23846 5' -53.6 NC_005261.1 + 41104 0.66 0.955018
Target:  5'- cCGCGUCgucc-GCgGCGGGCccgaGCGCu -3'
miRNA:   3'- -GCGUAGauauuCGgCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 118997 0.66 0.955018
Target:  5'- uGCGUCg--GGGCCuGCuGGGCccGCGCc -3'
miRNA:   3'- gCGUAGauaUUCGG-CG-CCUGcaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31306 0.66 0.955018
Target:  5'- cCGCcgCgcgGGGcCCGCGGGC--GCGCu -3'
miRNA:   3'- -GCGuaGauaUUC-GGCGCCUGcaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.