miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 20544 0.69 0.868319
Target:  5'- gCGCucugCUGgacguGGCgGCGGGC-UGCGCa -3'
miRNA:   3'- -GCGua--GAUau---UCGgCGCCUGcACGCG- -5'
23846 5' -53.6 NC_005261.1 + 20955 0.66 0.962462
Target:  5'- gGCuGUUUAcgAGGUCGUGGACcgcgGCGCg -3'
miRNA:   3'- gCG-UAGAUa-UUCGGCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 21183 0.67 0.942079
Target:  5'- aGCcgCUGgcgcgagcgcGGCCGCGGACGcUG-GCc -3'
miRNA:   3'- gCGuaGAUau--------UCGGCGCCUGC-ACgCG- -5'
23846 5' -53.6 NC_005261.1 + 21689 0.66 0.962462
Target:  5'- gGC-UCgagcgcGUCGCGGGCGaGCGCu -3'
miRNA:   3'- gCGuAGauauu-CGGCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 26237 0.68 0.90329
Target:  5'- aGCGgugAUAAGaCCGCGGAUGgggggGgGCg -3'
miRNA:   3'- gCGUagaUAUUC-GGCGCCUGCa----CgCG- -5'
23846 5' -53.6 NC_005261.1 + 28772 0.72 0.744195
Target:  5'- gGCGcCUG--GGCCGCGGcGCGgGCGCu -3'
miRNA:   3'- gCGUaGAUauUCGGCGCC-UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 29231 0.68 0.90329
Target:  5'- gCGCAggCUAc--GCCGCGG-CGccGCGCg -3'
miRNA:   3'- -GCGUa-GAUauuCGGCGCCuGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 29855 0.66 0.965842
Target:  5'- uGC-UCgcc-GGCCGCGcGGCGccgGCGCc -3'
miRNA:   3'- gCGuAGauauUCGGCGC-CUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 29918 0.72 0.724235
Target:  5'- aGCggCUGcgcGAGCUgGCGGACGcUGCGCu -3'
miRNA:   3'- gCGuaGAUa--UUCGG-CGCCUGC-ACGCG- -5'
23846 5' -53.6 NC_005261.1 + 30044 0.69 0.868319
Target:  5'- cCGCGgcCUGccGGCCGCGG-CcUGCGCu -3'
miRNA:   3'- -GCGUa-GAUauUCGGCGCCuGcACGCG- -5'
23846 5' -53.6 NC_005261.1 + 30202 0.68 0.890003
Target:  5'- cCGCG-CUGgaggcGGCCGCGcuGGCG-GCGCg -3'
miRNA:   3'- -GCGUaGAUau---UCGGCGC--CUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31306 0.66 0.955018
Target:  5'- cCGCcgCgcgGGGcCCGCGGGC--GCGCu -3'
miRNA:   3'- -GCGuaGauaUUC-GGCGCCUGcaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31373 0.67 0.92026
Target:  5'- uCGCAgaUCgcggaccCCGaGGACGUGCGCg -3'
miRNA:   3'- -GCGU--AGauauuc-GGCgCCUGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 31553 0.66 0.958855
Target:  5'- uCGCA-CgccUGGGCCGgguccUGGACGgGCGCg -3'
miRNA:   3'- -GCGUaGau-AUUCGGC-----GCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31861 0.66 0.954622
Target:  5'- gCGCGUCUucGGGCC-CGGcgccuucGCGcGCGCc -3'
miRNA:   3'- -GCGUAGAuaUUCGGcGCC-------UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 31928 0.78 0.405541
Target:  5'- cCGCcgCUGggcucuGCCGCGGcgccaACGUGCGCu -3'
miRNA:   3'- -GCGuaGAUauu---CGGCGCC-----UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 32028 0.66 0.958855
Target:  5'- gCGCGUgCU----GCCGCGGcucgACGgGCGCa -3'
miRNA:   3'- -GCGUA-GAuauuCGGCGCC----UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 32158 0.7 0.836358
Target:  5'- gCGCcgCUgcggccgguGUAccuGGCCuGCGGGCG-GCGCg -3'
miRNA:   3'- -GCGuaGA---------UAU---UCGG-CGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 33041 0.66 0.956581
Target:  5'- aGCGUCcgcgGAgggccaggacucggcGCCGgGGACGcgGCGCu -3'
miRNA:   3'- gCGUAGaua-UU---------------CGGCgCCUGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 35087 0.66 0.962462
Target:  5'- uCGCc-CUcgGAGCCGCGGugaGCG-GCGa -3'
miRNA:   3'- -GCGuaGAuaUUCGGCGCC---UGCaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.