miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 1180 0.68 0.909571
Target:  5'- gCGCcgCggccgGGGCCGgggcCGGGCGcgGCGCg -3'
miRNA:   3'- -GCGuaGaua--UUCGGC----GCCUGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 1928 0.67 0.93728
Target:  5'- gCGCA-CUGc--GCCGCGGGCagcaccgcgGCGCg -3'
miRNA:   3'- -GCGUaGAUauuCGGCGCCUGca-------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 2552 0.69 0.883004
Target:  5'- cCGCGgcgCU---GGgCGCGGGCGUGUGg -3'
miRNA:   3'- -GCGUa--GAuauUCgGCGCCUGCACGCg -5'
23846 5' -53.6 NC_005261.1 + 3655 0.75 0.579485
Target:  5'- gCGCGUCUGgagcgcAGGCCGCGGcCGgcagGcCGCg -3'
miRNA:   3'- -GCGUAGAUa-----UUCGGCGCCuGCa---C-GCG- -5'
23846 5' -53.6 NC_005261.1 + 3815 0.67 0.921398
Target:  5'- cCGC-UCgcgcgcuGCCGCGGGCccggGCGCu -3'
miRNA:   3'- -GCGuAGauauu--CGGCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 10245 0.69 0.868319
Target:  5'- gCGCAcUCgcc--GCCGCGGGCcugGCGCc -3'
miRNA:   3'- -GCGU-AGauauuCGGCGCCUGca-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 12294 0.74 0.631445
Target:  5'- cCGCGUCc----GCCGCGGGCacggGCGCg -3'
miRNA:   3'- -GCGUAGauauuCGGCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 12947 0.67 0.93728
Target:  5'- gCGCuUCUGgc--CCGCGcGGCGcGCGCa -3'
miRNA:   3'- -GCGuAGAUauucGGCGC-CUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 13117 0.74 0.610603
Target:  5'- gGCGUCggc-GGCCGCGGggcGCGUGUGg -3'
miRNA:   3'- gCGUAGauauUCGGCGCC---UGCACGCg -5'
23846 5' -53.6 NC_005261.1 + 13395 0.66 0.955018
Target:  5'- aCGCgGUCUcgGAGCgGUaGGGCGacgcgaagGCGCa -3'
miRNA:   3'- -GCG-UAGAuaUUCGgCG-CCUGCa-------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 13479 0.66 0.965842
Target:  5'- uGCAcgUCUcguAGauGCGGACGaGCGCg -3'
miRNA:   3'- gCGU--AGAuauUCggCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 13679 0.66 0.955018
Target:  5'- gGCG-Cg--GGGCgCGCGGGCGUGgGg -3'
miRNA:   3'- gCGUaGauaUUCG-GCGCCUGCACgCg -5'
23846 5' -53.6 NC_005261.1 + 14350 0.67 0.930146
Target:  5'- aGCAgcggcagcAGCCGCGGcCGgggcgGCGCg -3'
miRNA:   3'- gCGUagauau--UCGGCGCCuGCa----CGCG- -5'
23846 5' -53.6 NC_005261.1 + 14948 0.68 0.915608
Target:  5'- gGCG-CUGgAAGCgaGCGGGCGUGCc- -3'
miRNA:   3'- gCGUaGAUaUUCGg-CGCCUGCACGcg -5'
23846 5' -53.6 NC_005261.1 + 15248 0.67 0.942079
Target:  5'- cCGC-UCgcaGUGGGCCGCGaucgccccGGCG-GCGCc -3'
miRNA:   3'- -GCGuAGa--UAUUCGGCGC--------CUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 15491 0.69 0.868319
Target:  5'- gCGCcgCUc---GCUGCGGGCGggGCGUg -3'
miRNA:   3'- -GCGuaGAuauuCGGCGCCUGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 16167 0.67 0.921398
Target:  5'- gGCAguag-GGGgCGCGGGCGUG-GCg -3'
miRNA:   3'- gCGUagauaUUCgGCGCCUGCACgCG- -5'
23846 5' -53.6 NC_005261.1 + 17079 0.71 0.754027
Target:  5'- gGCGaCgggAUGGGCC-CGGugGUGUGCc -3'
miRNA:   3'- gCGUaGa--UAUUCGGcGCCugCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 17641 0.68 0.896766
Target:  5'- aGCgAUCgcgAGGCCGaugaGGAUG-GCGCg -3'
miRNA:   3'- gCG-UAGauaUUCGGCg---CCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 18961 0.66 0.958855
Target:  5'- cCGCAgCUc--AGUgGCGGugGgGCGCg -3'
miRNA:   3'- -GCGUaGAuauUCGgCGCCugCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.