miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 126794 0.66 0.950946
Target:  5'- uGCGUCUGccgaGAGCaGCGcGGCGUcuGCGUa -3'
miRNA:   3'- gCGUAGAUa---UUCGgCGC-CUGCA--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 116463 0.66 0.955018
Target:  5'- aGUGUgUGUGuuuuGCCggcGCGGGCGgggcggGCGCg -3'
miRNA:   3'- gCGUAgAUAUu---CGG---CGCCUGCa-----CGCG- -5'
23846 5' -53.6 NC_005261.1 + 31306 0.66 0.955018
Target:  5'- cCGCcgCgcgGGGcCCGCGGGC--GCGCu -3'
miRNA:   3'- -GCGuaGauaUUC-GGCGCCUGcaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 65806 0.66 0.950946
Target:  5'- gCGgGUCgggguGCC-CGGGCGgcgGCGCg -3'
miRNA:   3'- -GCgUAGauauuCGGcGCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 47619 0.66 0.946634
Target:  5'- uGCGgg-GgcGGCCGCGGcCGccGCGCg -3'
miRNA:   3'- gCGUagaUauUCGGCGCCuGCa-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 110821 0.66 0.946634
Target:  5'- gGCGgacg-GGGCCGCGGACGaguuucCGCu -3'
miRNA:   3'- gCGUagauaUUCGGCGCCUGCac----GCG- -5'
23846 5' -53.6 NC_005261.1 + 108533 0.66 0.953821
Target:  5'- gGgGUCUcgGUAGGCCagcgccgccgacacGCGcacgucgugcGACGUGCGCg -3'
miRNA:   3'- gCgUAGA--UAUUCGG--------------CGC----------CUGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 50946 0.66 0.955018
Target:  5'- uGCuUCUAcgcGGCCGUGGuCGacuacgGCGCg -3'
miRNA:   3'- gCGuAGAUau-UCGGCGCCuGCa-----CGCG- -5'
23846 5' -53.6 NC_005261.1 + 133819 0.66 0.946634
Target:  5'- gGCGaCg--AGGCgcugCGCGGccGCGUGCGCg -3'
miRNA:   3'- gCGUaGauaUUCG----GCGCC--UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 75865 0.66 0.952192
Target:  5'- gGCGgccccgacggcGCCGUGGGCGcGCGCa -3'
miRNA:   3'- gCGUagauauu----CGGCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 81042 0.66 0.955018
Target:  5'- uGguUCgugauGGCCGCGuACGUGCuGCc -3'
miRNA:   3'- gCguAGauau-UCGGCGCcUGCACG-CG- -5'
23846 5' -53.6 NC_005261.1 + 13395 0.66 0.955018
Target:  5'- aCGCgGUCUcgGAGCgGUaGGGCGacgcgaagGCGCa -3'
miRNA:   3'- -GCG-UAGAuaUUCGgCG-CCUGCa-------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 90454 0.66 0.946634
Target:  5'- uGCA-CUuuguGCgCGCGcACGUGCGCg -3'
miRNA:   3'- gCGUaGAuauuCG-GCGCcUGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 54141 0.66 0.950946
Target:  5'- gGCA-Cgcc--GCaCGCGGcCGUGCGCg -3'
miRNA:   3'- gCGUaGauauuCG-GCGCCuGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 134937 0.66 0.965842
Target:  5'- cCGCGgaggacGAGCCGaUGGGCGaggGCGCc -3'
miRNA:   3'- -GCGUagaua-UUCGGC-GCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 13679 0.66 0.955018
Target:  5'- gGCG-Cg--GGGCgCGCGGGCGUGgGg -3'
miRNA:   3'- gCGUaGauaUUCG-GCGCCUGCACgCg -5'
23846 5' -53.6 NC_005261.1 + 100786 0.66 0.946634
Target:  5'- gCGCGUCcgcAGGCCaGCaGGucccggaagggcGCGUGCGCc -3'
miRNA:   3'- -GCGUAGauaUUCGG-CG-CC------------UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 112694 0.66 0.946634
Target:  5'- gGCGUCg--AGGCCGUGccCGUGCa- -3'
miRNA:   3'- gCGUAGauaUUCGGCGCcuGCACGcg -5'
23846 5' -53.6 NC_005261.1 + 108166 0.66 0.955018
Target:  5'- gCGCGUCcgccaGGGCgCGCGGccGCGgcuccggGCGCg -3'
miRNA:   3'- -GCGUAGaua--UUCG-GCGCC--UGCa------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 75593 0.66 0.946634
Target:  5'- gCGC-UCgcgcgcGCCGCGGACGcggacgGCGUc -3'
miRNA:   3'- -GCGuAGauauu-CGGCGCCUGCa-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.