miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 134937 0.66 0.965842
Target:  5'- cCGCGgaggacGAGCCGaUGGGCGaggGCGCc -3'
miRNA:   3'- -GCGUagaua-UUCGGC-GCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 13117 0.74 0.610603
Target:  5'- gGCGUCggc-GGCCGCGGggcGCGUGUGg -3'
miRNA:   3'- gCGUAGauauUCGGCGCC---UGCACGCg -5'
23846 5' -53.6 NC_005261.1 + 60180 0.74 0.610603
Target:  5'- gCGCGUCUGc--GCCGCGGcggagaaguccGCGcGCGCg -3'
miRNA:   3'- -GCGUAGAUauuCGGCGCC-----------UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 99009 0.74 0.62102
Target:  5'- aGCGUCgc-GAGCgGCGGcGCGgcgGCGCg -3'
miRNA:   3'- gCGUAGauaUUCGgCGCC-UGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 118394 0.74 0.631445
Target:  5'- gGCG-CUGgcGGCCGCGGGCGccgcagccGCGCu -3'
miRNA:   3'- gCGUaGAUauUCGGCGCCUGCa-------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 12294 0.74 0.631445
Target:  5'- cCGCGUCc----GCCGCGGGCacggGCGCg -3'
miRNA:   3'- -GCGUAGauauuCGGCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 46242 0.73 0.662689
Target:  5'- gCGCGUCgc-AGGCCGCGG-CGgcgGcCGCg -3'
miRNA:   3'- -GCGUAGauaUUCGGCGCCuGCa--C-GCG- -5'
23846 5' -53.6 NC_005261.1 + 79716 0.73 0.662689
Target:  5'- gGCggCUGUAGcagacGCCGcCGGGCGcGCGCa -3'
miRNA:   3'- gCGuaGAUAUU-----CGGC-GCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 103499 0.73 0.662689
Target:  5'- aCGuCGUCggc--GCCGCGGACGgcgGCGUc -3'
miRNA:   3'- -GC-GUAGauauuCGGCGCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 73461 0.74 0.600204
Target:  5'- cCGCGUCcGcgcgcccccccUGGGCCGCGGcGCG-GCGCg -3'
miRNA:   3'- -GCGUAGaU-----------AUUCGGCGCC-UGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 104308 0.74 0.600204
Target:  5'- gCGCGcUCaaaGAGCgCGCGGACGcGCGCg -3'
miRNA:   3'- -GCGU-AGauaUUCG-GCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 76731 0.74 0.600204
Target:  5'- cCGCAgCUGgccgacguGCuCGCGGACGUGgCGCa -3'
miRNA:   3'- -GCGUaGAUauu-----CG-GCGCCUGCAC-GCG- -5'
23846 5' -53.6 NC_005261.1 + 50418 0.78 0.388256
Target:  5'- cCGCGUCgcgGAGCCGCucgugcaGCGUGCGCg -3'
miRNA:   3'- -GCGUAGauaUUCGGCGcc-----UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 31928 0.78 0.405541
Target:  5'- cCGCcgCUGggcucuGCCGCGGcgccaACGUGCGCu -3'
miRNA:   3'- -GCGuaGAUauu---CGGCGCC-----UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 55724 0.77 0.432357
Target:  5'- gCGUGUCUcUAuGUCGCGGGCGUGCuGCc -3'
miRNA:   3'- -GCGUAGAuAUuCGGCGCCUGCACG-CG- -5'
23846 5' -53.6 NC_005261.1 + 53572 0.77 0.450798
Target:  5'- gCGCA-CUAgcGGCCGCGGGcCGgcgGCGCc -3'
miRNA:   3'- -GCGUaGAUauUCGGCGCCU-GCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 111827 0.76 0.488922
Target:  5'- gCGCuUCUcccugAGGUCGCGGagcGCGUGCGCg -3'
miRNA:   3'- -GCGuAGAua---UUCGGCGCC---UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 112900 0.76 0.498689
Target:  5'- aGCGUCaaccuGCCGCGcuGCGUGCGCg -3'
miRNA:   3'- gCGUAGauauuCGGCGCc-UGCACGCG- -5'
23846 5' -53.6 NC_005261.1 + 98039 0.76 0.498689
Target:  5'- cCGCGguaCUGgcGGCCGCGGGCG-GCGg -3'
miRNA:   3'- -GCGUa--GAUauUCGGCGCCUGCaCGCg -5'
23846 5' -53.6 NC_005261.1 + 3655 0.75 0.579485
Target:  5'- gCGCGUCUGgagcgcAGGCCGCGGcCGgcagGcCGCg -3'
miRNA:   3'- -GCGUAGAUa-----UUCGGCGCCuGCa---C-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.