Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23847 | 3' | -56.4 | NC_005261.1 | + | 81371 | 0.66 | 0.890003 |
Target: 5'- gGGCGCcGGg--CUC-GCUGggGGCGc -3' miRNA: 3'- aCUGCGaCCuuaGAGcCGGCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 98025 | 0.72 | 0.571061 |
Target: 5'- cGAgGCUGGAGaCgccgcgguacuggCGGCCGcGGGCGg -3' miRNA: 3'- aCUgCGACCUUaGa------------GCCGGCuUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 79860 | 0.71 | 0.584246 |
Target: 5'- -cGCGCUGGggUugagcuuggccgcCUCGGCCcacAGGGCGc -3' miRNA: 3'- acUGCGACCuuA-------------GAGCCGGc--UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 125279 | 0.71 | 0.585263 |
Target: 5'- gGGcCGCUGGAAgucaGGCCGcGGGCGc -3' miRNA: 3'- aCU-GCGACCUUagagCCGGCuUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 79391 | 0.71 | 0.626141 |
Target: 5'- cGGCGCUGG-AUCUCGcuguaGUCGAgcAGGCc -3' miRNA: 3'- aCUGCGACCuUAGAGC-----CGGCU--UCCGc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 136601 | 0.71 | 0.626141 |
Target: 5'- cGGCGCagcgUGGAGcggCgcgcgCGcGCCGAGGGCGg -3' miRNA: 3'- aCUGCG----ACCUUa--Ga----GC-CGGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 32372 | 0.71 | 0.634341 |
Target: 5'- aGACGCUGGugcaggcgCGGCgCGgcGGCGu -3' miRNA: 3'- aCUGCGACCuuaga---GCCG-GCuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 70177 | 0.7 | 0.646637 |
Target: 5'- gGGCGC-GGGAg--CGGCCGcugugGAGGCGg -3' miRNA: 3'- aCUGCGaCCUUagaGCCGGC-----UUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 95470 | 0.7 | 0.646637 |
Target: 5'- cGGCGCUGGAgaagAUCaaGGCCcgcGGCGg -3' miRNA: 3'- aCUGCGACCU----UAGagCCGGcuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 104713 | 0.72 | 0.564999 |
Target: 5'- ---gGCUGGA----CGGCCGAGGGCGc -3' miRNA: 3'- acugCGACCUuagaGCCGGCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 73163 | 0.72 | 0.564999 |
Target: 5'- cGGCGUUGuug-CUCGGCCGggGGg- -3' miRNA: 3'- aCUGCGACcuuaGAGCCGGCuuCCgc -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 128114 | 0.72 | 0.544923 |
Target: 5'- cGGCGC-GGggUCg-GGCCGAgugcggagagAGGCGa -3' miRNA: 3'- aCUGCGaCCuuAGagCCGGCU----------UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 118371 | 0.77 | 0.302909 |
Target: 5'- gGGCGCUGGGG-CgcgCGGCCcGAGGCGc -3' miRNA: 3'- aCUGCGACCUUaGa--GCCGGcUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 50972 | 0.76 | 0.331943 |
Target: 5'- cGGCGC-GcGAAaccUCUCGGCCGAcGGCGg -3' miRNA: 3'- aCUGCGaC-CUU---AGAGCCGGCUuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 2980 | 0.76 | 0.371037 |
Target: 5'- cUGAgGCUGGGG-CUCGGCCu--GGCGg -3' miRNA: 3'- -ACUgCGACCUUaGAGCCGGcuuCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 32078 | 0.74 | 0.446159 |
Target: 5'- cGGCGCUGGGG-CUCGgggagccggacuucGCgGAGGGCGa -3' miRNA: 3'- aCUGCGACCUUaGAGC--------------CGgCUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 30203 | 0.73 | 0.476795 |
Target: 5'- -cGCGCUGGAGg--CGGCCGcgcuGGCGg -3' miRNA: 3'- acUGCGACCUUagaGCCGGCuu--CCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 20726 | 0.73 | 0.495862 |
Target: 5'- -cGCGCUGGGG-CUCGGCCGuuucacguguGGGUGu -3' miRNA: 3'- acUGCGACCUUaGAGCCGGCu---------UCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 14946 | 0.73 | 0.515267 |
Target: 5'- cUGGCGCUGGAAgcgagCgggCGuGCCuGGGGCGa -3' miRNA: 3'- -ACUGCGACCUUa----Ga--GC-CGGcUUCCGC- -5' |
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23847 | 3' | -56.4 | NC_005261.1 | + | 97087 | 0.72 | 0.544923 |
Target: 5'- aGGCGCcGG---CUgGGCCGggGGCGc -3' miRNA: 3'- aCUGCGaCCuuaGAgCCGGCuuCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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