miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 2425 0.7 0.664026
Target:  5'- cGGCgGCgGGccgcGAUCUCGGCCagcgccucggggucGAAGGCGa -3'
miRNA:   3'- aCUG-CGaCC----UUAGAGCCGG--------------CUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 2980 0.76 0.371037
Target:  5'- cUGAgGCUGGGG-CUCGGCCu--GGCGg -3'
miRNA:   3'- -ACUgCGACCUUaGAGCCGGcuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 5890 0.68 0.794022
Target:  5'- cUGGCucgGCUGGcuagCUCGGCCGGccGGCu -3'
miRNA:   3'- -ACUG---CGACCuua-GAGCCGGCUu-CCGc -5'
23847 3' -56.4 NC_005261.1 + 12483 0.66 0.868703
Target:  5'- cGACGCugugUGGAcUCUCcauGGCCccccGGGCGa -3'
miRNA:   3'- aCUGCG----ACCUuAGAG---CCGGcu--UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 13096 0.67 0.82903
Target:  5'- gGGCgGC-GGg--CUCGGCuCGggGGCGu -3'
miRNA:   3'- aCUG-CGaCCuuaGAGCCG-GCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 13678 0.66 0.883125
Target:  5'- gGGCGCgGGGcgCgCGGgCGuGGGGCGg -3'
miRNA:   3'- aCUGCGaCCUuaGaGCCgGC-UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 14946 0.73 0.515267
Target:  5'- cUGGCGCUGGAAgcgagCgggCGuGCCuGGGGCGa -3'
miRNA:   3'- -ACUGCGACCUUa----Ga--GC-CGGcUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 19096 0.67 0.844683
Target:  5'- gUGGCGUUGGAaguugcggGUCagcCGGUCGGuggggcuAGGCGg -3'
miRNA:   3'- -ACUGCGACCU--------UAGa--GCCGGCU-------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 20726 0.73 0.495862
Target:  5'- -cGCGCUGGGG-CUCGGCCGuuucacguguGGGUGu -3'
miRNA:   3'- acUGCGACCUUaGAGCCGGCu---------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 21207 0.7 0.687424
Target:  5'- gGACGCUGGcc-C-CGGCCGcgacGGCGg -3'
miRNA:   3'- aCUGCGACCuuaGaGCCGGCuu--CCGC- -5'
23847 3' -56.4 NC_005261.1 + 22786 0.68 0.766199
Target:  5'- --cCGCgagaagGGggUUgucgCGGCCGgcGGCGg -3'
miRNA:   3'- acuGCGa-----CCuuAGa---GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 22992 0.68 0.766199
Target:  5'- cGGCGgaGGAAgaggggGGcCCGGAGGCGg -3'
miRNA:   3'- aCUGCgaCCUUagag--CC-GGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 23628 0.69 0.737301
Target:  5'- gGGCGCggcgGGggUCgggCGGCUgGAAGGg- -3'
miRNA:   3'- aCUGCGa---CCuuAGa--GCCGG-CUUCCgc -5'
23847 3' -56.4 NC_005261.1 + 28744 0.7 0.656872
Target:  5'- cGAgGCcccagaGGAcgCcgCGGCCGggGGCGc -3'
miRNA:   3'- aCUgCGa-----CCUuaGa-GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 28785 0.68 0.803015
Target:  5'- cGGCGC-GGGcgCUcgCGGCCGc-GGCGg -3'
miRNA:   3'- aCUGCGaCCUuaGA--GCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 30203 0.73 0.476795
Target:  5'- -cGCGCUGGAGg--CGGCCGcgcuGGCGg -3'
miRNA:   3'- acUGCGACCUUagaGCCGGCuu--CCGC- -5'
23847 3' -56.4 NC_005261.1 + 30790 0.67 0.820527
Target:  5'- cGGCGgUGGAGgugCUgGgGCCGGAGGa- -3'
miRNA:   3'- aCUGCgACCUUa--GAgC-CGGCUUCCgc -5'
23847 3' -56.4 NC_005261.1 + 31579 0.67 0.85343
Target:  5'- gGGCGCgccGGAcgugagcgcgCUCGGCgCGcAGGGCGu -3'
miRNA:   3'- aCUGCGa--CCUua--------GAGCCG-GC-UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 32078 0.74 0.446159
Target:  5'- cGGCGCUGGGG-CUCGgggagccggacuucGCgGAGGGCGa -3'
miRNA:   3'- aCUGCGACCUUaGAGC--------------CGgCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 32372 0.71 0.634341
Target:  5'- aGACGCUGGugcaggcgCGGCgCGgcGGCGu -3'
miRNA:   3'- aCUGCGACCuuaga---GCCG-GCuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.