miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 33847 0.68 0.794022
Target:  5'- cUGGCGCUGGg--Cg-GGCCGGgaGGGCc -3'
miRNA:   3'- -ACUGCGACCuuaGagCCGGCU--UCCGc -5'
23847 3' -56.4 NC_005261.1 + 34221 0.68 0.803015
Target:  5'- gGACGC-GGAcgCagacgCGGCCGucaucuGGGGCGa -3'
miRNA:   3'- aCUGCGaCCUuaGa----GCCGGC------UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 34394 0.66 0.868703
Target:  5'- cGGCGCaGGAGUUuaUCGaCCGGGuGGCGc -3'
miRNA:   3'- aCUGCGaCCUUAG--AGCcGGCUU-CCGC- -5'
23847 3' -56.4 NC_005261.1 + 34490 0.7 0.656872
Target:  5'- gGGUGCUGGAGUg--GGUCGAGGGCGc -3'
miRNA:   3'- aCUGCGACCUUAgagCCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 34908 0.68 0.766199
Target:  5'- gGACGC-GGAgGUCggggcgCGGCCacgcgGggGGCGg -3'
miRNA:   3'- aCUGCGaCCU-UAGa-----GCCGG-----CuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 37243 0.66 0.889325
Target:  5'- cGGCGCgUGGAcagcgcggagaccAUCcUGGCCGAGccgugccgcGGCGa -3'
miRNA:   3'- aCUGCG-ACCU-------------UAGaGCCGGCUU---------CCGC- -5'
23847 3' -56.4 NC_005261.1 + 38246 0.67 0.82903
Target:  5'- gGGCGCcGGGcucgcacgccaGcCUgGGCUGggGGCGg -3'
miRNA:   3'- aCUGCGaCCU-----------UaGAgCCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 40289 0.68 0.756674
Target:  5'- aGACGaugUGGAcguUCUCGucGCgGAGGGCGg -3'
miRNA:   3'- aCUGCg--ACCUu--AGAGC--CGgCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 43409 0.66 0.883125
Target:  5'- aGGCGCcGGGGgcggcCUCcGCCGccGGCGg -3'
miRNA:   3'- aCUGCGaCCUUa----GAGcCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 43818 0.69 0.707576
Target:  5'- gGGCGCgcccuccgUGGAGaagcugCUCGG-CGAGGGCGa -3'
miRNA:   3'- aCUGCG--------ACCUUa-----GAGCCgGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 46083 0.66 0.868703
Target:  5'- cGugGCcGGAcacgagcacGUa-CGGCCGggGGCc -3'
miRNA:   3'- aCugCGaCCU---------UAgaGCCGGCuuCCGc -5'
23847 3' -56.4 NC_005261.1 + 50972 0.76 0.331943
Target:  5'- cGGCGC-GcGAAaccUCUCGGCCGAcGGCGg -3'
miRNA:   3'- aCUGCGaC-CUU---AGAGCCGGCUuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 55052 0.66 0.883125
Target:  5'- -uGCGCgGGGccggcgagCUCGGCCGccgAAGGCa -3'
miRNA:   3'- acUGCGaCCUua------GAGCCGGC---UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 55202 0.66 0.868703
Target:  5'- cGGCGUagcGcGGAUCcggCGGCCcGAGGCGg -3'
miRNA:   3'- aCUGCGa--C-CUUAGa--GCCGGcUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 56136 0.7 0.656872
Target:  5'- gGGCGggGGGcgCg-GGCCGAGGGUGg -3'
miRNA:   3'- aCUGCgaCCUuaGagCCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 56482 0.78 0.275869
Target:  5'- aGGCGCUGGAGUCUaugCGcGCCucAGGCGc -3'
miRNA:   3'- aCUGCGACCUUAGA---GC-CGGcuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 57867 0.68 0.756674
Target:  5'- cGGCGCUcgggucGGGAagUCGGCCGGcacgGGGaCGg -3'
miRNA:   3'- aCUGCGA------CCUUagAGCCGGCU----UCC-GC- -5'
23847 3' -56.4 NC_005261.1 + 59415 0.66 0.883125
Target:  5'- cGGCGCcGGcgcuGUCgcgCGGCCcGGcAGGCGc -3'
miRNA:   3'- aCUGCGaCCu---UAGa--GCCGG-CU-UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 61574 0.67 0.845489
Target:  5'- gUGGCGCUGGuga--UGGCCGuguucguGGGCa -3'
miRNA:   3'- -ACUGCGACCuuagaGCCGGCu------UCCGc -5'
23847 3' -56.4 NC_005261.1 + 64497 0.69 0.71756
Target:  5'- gUGGCGCgGGug-CUCGGggcCCGcGGGCGg -3'
miRNA:   3'- -ACUGCGaCCuuaGAGCC---GGCuUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.