miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 136601 0.71 0.626141
Target:  5'- cGGCGCagcgUGGAGcggCgcgcgCGcGCCGAGGGCGg -3'
miRNA:   3'- aCUGCG----ACCUUa--Ga----GC-CGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 131698 0.68 0.794022
Target:  5'- cGGCGCUGGAccgcCUCGagaGCC--AGGCGg -3'
miRNA:   3'- aCUGCGACCUua--GAGC---CGGcuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 130513 0.67 0.845489
Target:  5'- gUGGCGCaGGcg-CU-GGCCGAAGcGCGc -3'
miRNA:   3'- -ACUGCGaCCuuaGAgCCGGCUUC-CGC- -5'
23847 3' -56.4 NC_005261.1 + 128114 0.72 0.544923
Target:  5'- cGGCGC-GGggUCg-GGCCGAgugcggagagAGGCGa -3'
miRNA:   3'- aCUGCGaCCuuAGagCCGGCU----------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 125882 0.67 0.837353
Target:  5'- cGGCGCc-----CUUGGCUGAAGGCGc -3'
miRNA:   3'- aCUGCGaccuuaGAGCCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 125279 0.71 0.585263
Target:  5'- gGGcCGCUGGAAgucaGGCCGcGGGCGc -3'
miRNA:   3'- aCU-GCGACCUUagagCCGGCuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 121814 0.7 0.697527
Target:  5'- cGugGCUGGGcUCUgCgGGCCGccgcGGCGg -3'
miRNA:   3'- aCugCGACCUuAGA-G-CCGGCuu--CCGC- -5'
23847 3' -56.4 NC_005261.1 + 118642 0.67 0.85343
Target:  5'- cGGCGCUcugggccccGGGccgcgcgCUCggGGCUGAGGGCGg -3'
miRNA:   3'- aCUGCGA---------CCUua-----GAG--CCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 118371 0.77 0.302909
Target:  5'- gGGCGCUGGGG-CgcgCGGCCcGAGGCGc -3'
miRNA:   3'- aCUGCGACCUUaGa--GCCGGcUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 118156 0.68 0.782113
Target:  5'- aGACGCUGGccgucGcggcggggcuugccGUCUgGGCCGcGGGCc -3'
miRNA:   3'- aCUGCGACC-----U--------------UAGAgCCGGCuUCCGc -5'
23847 3' -56.4 NC_005261.1 + 118009 0.66 0.883125
Target:  5'- cGGCGCUGGAcgCugUCGGacgcaCGcGGGGCc -3'
miRNA:   3'- aCUGCGACCUuaG--AGCCg----GC-UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 113898 0.67 0.845489
Target:  5'- cGACGCggcGGGcgCgauGGCCGAggcagcGGGCGc -3'
miRNA:   3'- aCUGCGa--CCUuaGag-CCGGCU------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 113556 0.67 0.82903
Target:  5'- -cGCGCUGGAccgcgagcagugGUCggUGGCCGccgcgcuGGGCGa -3'
miRNA:   3'- acUGCGACCU------------UAGa-GCCGGCu------UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 105140 0.69 0.707576
Target:  5'- cGGCGCgcgcaGGuccUCgCGGCuCGAGGGCGg -3'
miRNA:   3'- aCUGCGa----CCuu-AGaGCCG-GCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 104713 0.72 0.564999
Target:  5'- ---gGCUGGA----CGGCCGAGGGCGc -3'
miRNA:   3'- acugCGACCUuagaGCCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 102328 0.66 0.882425
Target:  5'- cGGCGCgcagccgcgccagCUCGGCCgcgucGAAGGCGg -3'
miRNA:   3'- aCUGCGaccuua-------GAGCCGG-----CUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 98711 0.69 0.71756
Target:  5'- cUGGgGCcGGggUC-CGGCCuuGggGGCa -3'
miRNA:   3'- -ACUgCGaCCuuAGaGCCGG--CuuCCGc -5'
23847 3' -56.4 NC_005261.1 + 98526 0.68 0.803015
Target:  5'- aGGCGCga-GAUC-CGGCCGGuAGGCu -3'
miRNA:   3'- aCUGCGaccUUAGaGCCGGCU-UCCGc -5'
23847 3' -56.4 NC_005261.1 + 98285 0.68 0.775605
Target:  5'- cGACGCccGGcgcGUCcgCGGCCucGggGGCGg -3'
miRNA:   3'- aCUGCGa-CCu--UAGa-GCCGG--CuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 98118 0.69 0.703564
Target:  5'- cGAgGCUGGGGaCgccgcggcaccggCGGCCGucGGCGg -3'
miRNA:   3'- aCUgCGACCUUaGa------------GCCGGCuuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.